RNA id: TU1912345


Basic Information

Item Value
RNA id TU1912345
length 2595
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1671453
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18388163 ~ 18391408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacccttggaaacagcacctatgacaccattttaagacacttccggtttacacaggaagctgaaagtgaacacatggggtaggcaattatagaattttgagttttaagtctttatgttaaggggattcgtacaatgtcaaatacgtgatgttcaaaaatagtttttttttttttttttttaaacagttacagatccagttgcagtgtgttcatacgaatctttttaaagtgtgcttctGAGTTCTACGAgatttctatgattttctgaaataacacacactcactaaataagtcagttcttaataAGCCCACCCGACCCATCTagccacctggaaatgcaaatgcgctacgctaaatgctaatagtgctcgttaaaactcaaacgttcattaaaacacacatgtagggtattgaattaaagctacactcgttgtgaatctagccaacaagtcagatttttaaaatgcttttcggtgaaagcatgagaagctattatctgatagcatgcaacaccccgaaatacctgaaggcgacgtaaacaaaataattagcgtagccggcactacacaaatagcagaaataaaatattcattacctttgacgagcttctttgttggcactcctatatgccctataaacatcactattgggtcttttttttcgattaaatcggtggaaactgtgattcagaaaaaaacaccgttttcaaaacgcagcgtcatttCTTAAAATTAAAAaggtcgacgataaactttcacaaaacacttcgaaatacttttgtaatccaactttaggtattagtaaacgttaatgatctatcaaattgatcacggggcgatgtgtaattcaatagctccacgtcttcaaatcatgttcggaaatctctcttccaaaacttcctgtcggagaccggatggaATGGGGTTTCTTCTTTGTTTGACCAATAAATAACTCCCAGAAATtgacaagactggcgacatcgtgtggaagctgtaggaattgcaatctcagCACCATTTAATTTGgtgtggcgcatggatatttttttcagtgaCCAATTTTCTTGCGCTTTttgatgaaacacacgctctgttatagccacagccgtgatttaactaGTTTTAGAAACgtgagagtgttttctatccacacatactaatcatatgcatgtactatattcctggcatgagtagcaggacacCAATGaggacatgtgtttacctatagcttcctgtgccaaccggaagtgccataattggtgtcagagGGGCtgtttggcgacatcgtgtggaagctgtaggaattgcaatgtCAGCACCATtttaatttggtgtcccttaAAAAAATGTCAGATCTTTCCAACACTTcatttgtgtgattaggcaactcccaaatcagtaatttctcccaacaatgtcaaagaaaagctctcacacacacacagattacgaCACCTCTCCCCTcagaggtcctcccgatctgtgcaagcctaaccttgaccgtgtggcattaacccttaacagtaaaacatttttttttgatctcacagattacaacgacatctctccccataggaatacattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggacactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtggttaaaatcaccctaaacgtgtttttttcatacccaaccagcagtttgtgataaagagtgcattcaaccctgtgtaaatcggtcttaacataaacacttaaaactcaggattctgtaaaggcataccccaatgaggatatgtgtttacctatagcttcctgtgccaaccggaagtgccataattggtgtcacaggggatgtttcaaagggttaaaaaagtcagatctttccaaaacttcatgtgtgtgattaggcaacccccatgaactgtaaatcaatAATTTCTCCCAAAATATGTCAAAGaaaagcacacatacacacacacacacacctgttggaTTTTTAAAGTGTTTAAACCTGGCATTTTAAAATCAACTTTGAACGAAACGTCTTattgagtggtattggacacagtgtatatggtttgtcaagtgccaatgacttcccatcaatttttgtccatttcaggggggtgttcTCTTACAATACCTCTTCCTGAAATTTGTTGATAGTGTTCCTAACATCCCAAAAACGCAGCTCTGGACAACTAATTGTATTTTATGGTTTGAAAcctgctgaaaattgtccaaggtGTTACTGCCATCTTAACTGTGGACAACATTGTATTTGCtaattgcatcaaacatgatttagagcttgtttatggaaaagtgtctataactgtatttcaatgttgcaacttgctgaaagtGTATCTTATCTGGCAAAATAGTGCCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTTCTATGTTTTAACTTCGTTTCATTTAAATTGTAATTTAATAAAACCAAGAATGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912498 lncRNA downstream 647 18385454 ~ 18387516 (-) True G1671546
TU1912494 lncRNA downstream 8588 18376227 ~ 18379575 (-) True LOC110512504
TU1912485 lncRNA downstream 18990 18350871 ~ 18369173 (-) False G1671541
TU1912500 lncRNA upstream 872 18392280 ~ 18398313 (-) True G1671548
TU1912508 lncRNA upstream 67785 18459193 ~ 18465446 (-) True G1671554
TU1912511 lncRNA upstream 68817 18460225 ~ 18466719 (-) False G1671555
TU1912512 lncRNA upstream 68817 18460225 ~ 18466719 (-) True G1671555
TU1912515 lncRNA upstream 94569 18485977 ~ 18493803 (-) False G1671557
XR_005037950.1 mRNA downstream 3705 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 7905 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 7906 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 7908 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 362686 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 362686 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 362686 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 362686 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 362686 18754094 ~ 18887492 (-) True LOC110498770
TU1912373 other downstream 355321 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 359935 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 360441 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 693579 17687735 ~ 17694584 (-) True G1670142
TU1910889 other downstream 696297 17685976 ~ 17691866 (-) True G1670145
TU1912501 other upstream 8944 18400352 ~ 18406596 (-) True G1671549
TU1912502 other upstream 17716 18409124 ~ 18415464 (-) False G1671550
TU1912503 other upstream 17716 18409124 ~ 18409764 (-) True G1671550
TU1912546 other upstream 174462 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 174462 18565870 ~ 18624587 (-) True G1671578

Expression Profile