RNA id: TU1912502



Basic Information


Item Value
RNA id TU1912502
length 404
RNA type TUCP
GC content 0.56
exon number 2
gene id G1671550
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18409124 ~ 18415464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1912500 lncRNA downstream 10811 18392280 ~ 18398313 (-) True G1671548
TU1912343 lncRNA downstream 17716 18388163 ~ 18391408 (-) False G1671453
TU1912345 lncRNA downstream 17716 18388163 ~ 18391408 (-) True G1671453
TU1912498 lncRNA downstream 21608 18385454 ~ 18387516 (-) True G1671546
TU1912494 lncRNA downstream 29549 18376227 ~ 18379575 (-) True LOC110512504
TU1912508 lncRNA upstream 43729 18459193 ~ 18465446 (-) True G1671554
TU1912511 lncRNA upstream 44761 18460225 ~ 18466719 (-) False G1671555
TU1912512 lncRNA upstream 44761 18460225 ~ 18466719 (-) True G1671555
TU1912515 lncRNA upstream 70513 18485977 ~ 18493803 (-) False G1671557
TU1912516 lncRNA upstream 71213 18486677 ~ 18510389 (-) False G1671557
XR_005037950.1 mRNA downstream 24666 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 28866 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 28867 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 28869 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 338630 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 338630 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 338630 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 338630 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 338630 18754094 ~ 18887492 (-) True LOC110498770
TU1912501 other downstream 2528 18400352 ~ 18406596 (-) True G1671549
TU1912373 other downstream 376282 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 380896 18022444 ~ 18028228 (-) False G1671478
TU1912370 other downstream 381402 18022444 ~ 18027722 (-) False G1671478
TU1910885 other downstream 714540 17687735 ~ 17694584 (-) True G1670142
TU1912546 other upstream 150406 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 150406 18565870 ~ 18624587 (-) True G1671578
TU1912552 other upstream 178589 18594053 ~ 18642884 (-) False G1671580
TU1912551 other upstream 178796 18594260 ~ 18600116 (-) False G1671580
TU1912550 other upstream 215249 18630713 ~ 18642884 (-) False G1671580