RNA id: TU1912508


Basic Information

Item Value
RNA id TU1912508
length 528
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1671554
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18459193 ~ 18465446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatcgtgcggcagagtcgatttccgcgcttataaacgcaaggtcgttacagtattttatcagcaaaacatcatttccaaaatatttcaaacacttgttaacatgatgtaatatgaccttgaggcaatttctaccacaaaactactaatggtaaggattggttttggggtattggtaacttttttgttattgaatcttacctcgcggtgctccgttgtatatccgacgtcagcatgacaacaaactagctagctcttagctctctgttatagtatagttatagtatagttacagttcaatgggaaaagcaaatcaattaagacctgaaattgaaatatactggcacatcaatcgtctgtatatgaaattcatttgaaagggtgaggttaaagatgtttgtttttgtgtgtagttcaccactaatcggtagctaggtaacgttagtttaataaccgaaatttgagctaggctagctgttagctaacgcttgactttgtcatcatgagataacgttacattagacatac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912500 lncRNA downstream 60880 18392280 ~ 18398313 (-) True G1671548
TU1912343 lncRNA downstream 67785 18388163 ~ 18391408 (-) False G1671453
TU1912345 lncRNA downstream 67785 18388163 ~ 18391408 (-) True G1671453
TU1912498 lncRNA downstream 71677 18385454 ~ 18387516 (-) True G1671546
TU1912494 lncRNA downstream 79618 18376227 ~ 18379575 (-) True LOC110512504
TU1912515 lncRNA upstream 20531 18485977 ~ 18493803 (-) False G1671557
TU1912516 lncRNA upstream 21231 18486677 ~ 18510389 (-) False G1671557
TU1912518 lncRNA upstream 22194 18487640 ~ 18493803 (-) True G1671557
TU1912525 lncRNA upstream 50177 18515623 ~ 18523383 (-) True G1671562
TU1912528 lncRNA upstream 57409 18522855 ~ 18613440 (-) False G1671565
XR_005037950.1 mRNA downstream 74735 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 78935 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 78936 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 78938 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 288648 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 288648 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 288648 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 288648 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 288648 18754094 ~ 18887492 (-) True LOC110498770
TU1912502 other downstream 43729 18409124 ~ 18415464 (-) False G1671550
TU1912503 other downstream 49429 18409124 ~ 18409764 (-) True G1671550
TU1912501 other downstream 52597 18400352 ~ 18406596 (-) True G1671549
TU1912373 other downstream 426351 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 430965 18022444 ~ 18028228 (-) False G1671478
TU1912546 other upstream 100424 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 100424 18565870 ~ 18624587 (-) True G1671578
TU1912552 other upstream 128607 18594053 ~ 18642884 (-) False G1671580
TU1912551 other upstream 128814 18594260 ~ 18600116 (-) False G1671580
TU1912550 other upstream 165267 18630713 ~ 18642884 (-) False G1671580

Expression Profile