RNA id: TU1912515


Basic Information

Item Value
RNA id TU1912515
length 2117
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1671557
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18485977 ~ 18510389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaagtgtttatgttaagaactgaccgatttacacagggttgaatgcactatttatcacaagctgctggttgggtatggaaaaacacgtttagggtgattttaaccacttccggttgcttcaggaagcttagaatcgacacaggtagacctcatagtatcctgatggactgtcattgaagacaggttcataaggcattcataacccacataggcttcaggttgactttagaggagcaggcaatgtattcctatggggagagatgtcgttgtaatctgtgagatcaaaaaaaaactgttttactgttaagggttaatgccacgcggtcaaggttaggcttgcacagatcgggaggacctcaggaacgtacctgatgtcgaattgtgcttctcaccctaacggttctctcactgtcacccaaaagcaaatgacatttagggccaggcttcattttgggcctacttttttcacggtcgctgcactcagagcgagctacggtcaagcggggcatctccttgaactcggaacggcctagagaatatggaaatgccattgcaggctctgtgtgtctttaagcaccgcactttgtcactccatccttgctgtgtgtgtgtgtgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaatgactgatttacagttcatggggggaaaaaacaacataacttccaaaggttttcaaccacttttcgtgaacatgagaatatttctaccataaaactactacacgattttgtgtactttactcagaaaatatccttttagtcagatttccaacattggtgattaacatgatttaatatgacttttgtggcaatttctacagaaacactactaaaggacagaatggaggtataatttgtagaatttcaaccatgagatctttttcaataataatagaaataattgtatgcattttagtcagtgacattggtgattaacattaggcaatttctatcataaaattacaacacaacagaagtgaagtgccatttggagaatttcaacctcggagatattttataatatttgaggaaatcaattttacgtattttaacaggcaaagcataatttccaaaagatttcaaacactttgggaaatgcgtgcctgtagtgaaattgcatgtttgcatagcgcgcggaggtgatagtgcggcagagtcgatttccgcgcttataaacgcaacgtcgttacagtattttatcagcaaaacatcatttccaaaatatttcaaacacttgttaacatgatgtaatatgaccttgaggcaatttctaccacaaaactactaatggtaaggattggttttggggtattggtaacttttttgttattgaatcttacctcgcggtgctccgtcgtatatccgacgtcagcatgacaacaaactagctagctcttagctctctgttatagtatagttatagtatagttacagttcaatgggaaaagcaaatcaattaagacttgaaattgaaatatactggcacatcaatcgtctgtatatgaaattcatttgaaagggtgaggttaaagatgtttgtttttgtgtgtagttcaccactaatcggtagctaggtaacgttagtttaataaccgaaatttgagctaggctagctgttagctaacgcttgactttgtcatcatgagataacgttacattagacatacaagcttcgctagcgatatgtttttggaggcgtaatgaccttatctttcatatccgtgataacccattttcaaaaaactaaaatttaaattgatacacagctttatagggctggggttcccacacgaccatatttccatctcacagcgcttatttacggaagacagagtggactacctgagctaattagcaatctgtttctccgaatacgcctgctgtgtgaagacagacgccacaaacgtgttgttactgaaaaatactgttctgtgttaaccggttaagaccgtgtacagtaggtgtgtattttttttgcattagtgaaattattttgacgtgatatgaacctagagggatttatttcaagaaccgtaacgttactgcaactgagaatcgattcacgtttagatggcttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912511 lncRNA downstream 19258 18460225 ~ 18466719 (-) False G1671555
TU1912512 lncRNA downstream 19258 18460225 ~ 18466719 (-) True G1671555
TU1912508 lncRNA downstream 20531 18459193 ~ 18465446 (-) True G1671554
TU1912500 lncRNA downstream 87664 18392280 ~ 18398313 (-) True G1671548
TU1912343 lncRNA downstream 94569 18388163 ~ 18391408 (-) False G1671453
TU1912525 lncRNA upstream 21820 18515623 ~ 18523383 (-) True G1671562
TU1912528 lncRNA upstream 29052 18522855 ~ 18613440 (-) False G1671565
TU1912536 lncRNA upstream 45034 18538837 ~ 18544863 (-) True G1671572
TU1912543 lncRNA upstream 58372 18552175 ~ 18610473 (-) False G1671576
TU1912529 lncRNA upstream 61541 18555344 ~ 18613440 (-) True G1671565
XR_005037950.1 mRNA downstream 101519 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 105719 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 105720 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 105722 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 260291 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 260291 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 260291 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 260291 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 260291 18754094 ~ 18887492 (-) True LOC110498770
TU1912502 other downstream 70513 18409124 ~ 18415464 (-) False G1671550
TU1912503 other downstream 76213 18409124 ~ 18409764 (-) True G1671550
TU1912501 other downstream 79381 18400352 ~ 18406596 (-) True G1671549
TU1912373 other downstream 453135 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 457749 18022444 ~ 18028228 (-) False G1671478
TU1912546 other upstream 72067 18565870 ~ 18617140 (-) False G1671578
TU1912547 other upstream 72067 18565870 ~ 18624587 (-) True G1671578
TU1912552 other upstream 100250 18594053 ~ 18642884 (-) False G1671580
TU1912551 other upstream 100457 18594260 ~ 18600116 (-) False G1671580
TU1912550 other upstream 136910 18630713 ~ 18642884 (-) False G1671580

Expression Profile