RNA id: TU1912541



Basic Information


Item Value
RNA id TU1912541
length 562
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1671576
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18552175 ~ 18617969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgtaaattgatacacagctttatagggctggggttcccacacgaccatatttccatctcacagcgcttatttacggaagacagagtggactacctgagctaattagcaatctgtttctccgaatacgcctgctgtgtgaagacagacgccacaaacgtgttgttactgaaaaatactgttctgtgttaaccggttaagaccgtgtacagtaggtgtgtattttttgcattagtgaaattattttgatgtgatatgaacctagagggatttatttcaagaaccgtaacgttactgcaactgagaatcgattcacgtttagatggcttccagagctaattctccctttaaatataacatgtacctaaggtcattggacaaaggagtaacgctaggctaattttactccactattgggctagcgttagcatcgttgcattgtagcagacgtttgactcagtaaaccatatcagcaaaccaatggggaaagtccacggtctttaccaacgcaactagctagctagctagctaccttgttttgtgtagtgacacagggactgaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1912536 lncRNA downstream 21865 18538837 ~ 18544863 (-) True G1671572
TU1912525 lncRNA downstream 43345 18515623 ~ 18523383 (-) True G1671562
TU1912516 lncRNA downstream 56339 18486677 ~ 18510389 (-) False G1671557
TU1912515 lncRNA downstream 72925 18485977 ~ 18493803 (-) False G1671557
TU1912560 lncRNA upstream 35390 18653359 ~ 18658883 (-) True G1671587
TU1912561 lncRNA upstream 35973 18653942 ~ 18661852 (-) True G1671588
TU1912564 lncRNA upstream 47882 18665851 ~ 18680764 (-) True G1671591
TU1912361 lncRNA upstream 56375 18674344 ~ 18738941 (-) True G1671469
TU1912565 lncRNA upstream 62279 18680248 ~ 18686044 (-) True G1671592
XR_005037950.1 mRNA downstream 182270 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 186470 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 186471 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 186473 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 136125 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 136125 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 136125 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 136125 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 136125 18754094 ~ 18887492 (-) True LOC110498770
TU1912502 other downstream 151264 18409124 ~ 18415464 (-) False G1671550
TU1912503 other downstream 156964 18409124 ~ 18409764 (-) True G1671550
TU1912501 other downstream 160132 18400352 ~ 18406596 (-) True G1671549
TU1912373 other downstream 533886 18022444 ~ 18032842 (-) True G1671478
TU1912371 other downstream 538500 18022444 ~ 18028228 (-) False G1671478
TU1912550 other upstream 12744 18630713 ~ 18642884 (-) False G1671580
TU1912557 other upstream 13538 18631507 ~ 18632087 (-) True G1671584
TU1912549 other upstream 20412 18638381 ~ 18642884 (-) True G1671580
TU1912688 other upstream 436161 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 708845 19326814 ~ 19406931 (-) True G1671859

Expression Profile