Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050230 |
| length | 933 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_025478 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 32410746 ~ 32416121 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0007265 | Ras protein signal transduction | biological_process |
| GO:0045199 | maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019003 | GDP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04014 | Ras signaling pathway |
| ko04015 | Rap1 signaling pathway |
| ko04371 | Apelin signaling pathway |
| ko04072 | Phospholipase D signaling pathway |
| ko04024 | cAMP signaling pathway |
| ko04140 | Autophagy - animal |
| ko04137 | Mitophagy - animal |
| ko04218 | Cellular senescence |
| ko04810 | Regulation of actin cytoskeleton |
| ko04625 | C-type lectin receptor signaling pathway |
| ko04360 | Axon guidance |
| ko05205 | Proteoglycans in cancer |
| ko05132 | Salmonella infection |
| ko04031 | GTP-binding proteins |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050222 | lncRNA | upstream | 21153 | 32389560 ~ 32390332 (+) | False | XLOC_025476 |
| TCONS_00052720 | lncRNA | upstream | 63992 | 32346134 ~ 32347493 (+) | True | XLOC_025475 |
| TCONS_00052719 | lncRNA | upstream | 114482 | 32293773 ~ 32297003 (+) | True | XLOC_025473 |
| TCONS_00050213 | lncRNA | upstream | 291392 | 32118677 ~ 32120093 (+) | False | XLOC_025467 |
| TCONS_00050208 | lncRNA | upstream | 310846 | 32099699 ~ 32100639 (+) | False | XLOC_025464 |
| TCONS_00050237 | lncRNA | downstream | 5477 | 32420320 ~ 32424231 (+) | True | XLOC_025479 |
| TCONS_00050240 | lncRNA | downstream | 59818 | 32474661 ~ 32477285 (+) | True | XLOC_025481 |
| TCONS_00050249 | lncRNA | downstream | 118069 | 32532912 ~ 32535695 (+) | False | XLOC_025485 |
| TCONS_00052721 | lncRNA | downstream | 118069 | 32532912 ~ 32536378 (+) | False | XLOC_025485 |
| TCONS_00050250 | lncRNA | downstream | 119770 | 32534613 ~ 32536378 (+) | True | XLOC_025485 |
| TCONS_00050226 | mRNA | upstream | 4293 | 32403758 ~ 32407192 (+) | True | XLOC_025477 |
| TCONS_00050221 | mRNA | upstream | 10004 | 32365811 ~ 32401481 (+) | False | XLOC_025476 |
| TCONS_00050223 | mRNA | upstream | 11591 | 32389904 ~ 32399894 (+) | False | XLOC_025476 |
| TCONS_00050225 | mRNA | upstream | 11634 | 32396741 ~ 32399851 (+) | True | XLOC_025476 |
| TCONS_00050224 | mRNA | upstream | 12491 | 32391540 ~ 32398994 (+) | False | XLOC_025476 |
| TCONS_00050232 | mRNA | downstream | 2105 | 32416948 ~ 32424142 (+) | False | XLOC_025479 |
| TCONS_00050233 | mRNA | downstream | 2137 | 32416980 ~ 32424298 (+) | False | XLOC_025479 |
| TCONS_00050234 | mRNA | downstream | 2189 | 32417032 ~ 32424303 (+) | False | XLOC_025479 |
| TCONS_00050235 | mRNA | downstream | 2248 | 32417091 ~ 32424164 (+) | False | XLOC_025479 |
| TCONS_00050236 | mRNA | downstream | 2265 | 32417108 ~ 32423780 (+) | False | XLOC_025479 |
| TCONS_00050194 | other | upstream | 622848 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050187 | other | upstream | 807781 | 31600648 ~ 31603704 (+) | True | XLOC_025451 |
| TCONS_00050170 | other | upstream | 1716613 | 30694783 ~ 30694872 (+) | True | XLOC_025435 |
| TCONS_00050160 | other | upstream | 2162449 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
| TCONS_00050148 | other | upstream | 2756560 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050246 | other | downstream | 117753 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
| TCONS_00050254 | other | downstream | 156466 | 32571309 ~ 32571371 (+) | True | XLOC_025487 |
| TCONS_00050265 | other | downstream | 247148 | 32661991 ~ 32663746 (+) | False | XLOC_025493 |
| TCONS_00050268 | other | downstream | 256347 | 32671190 ~ 32671963 (+) | False | XLOC_025494 |
| TCONS_00050288 | other | downstream | 427951 | 32842794 ~ 32848026 (+) | False | XLOC_025502 |
