RNA id: TU1912550


Basic Information

Item Value
RNA id TU1912550
length 1561
RNA type TUCP
GC content 0.45
exon number 4
gene id G1671580
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18594053 ~ 18642884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgttgtgtcattatggggtgttgtgtgtagattgaggggaaaaatgtattaatatattgttagttacgctgtaacataacaatgtggaaaaagtgaaggggtctgaatactttctgaatgcactgtagatgtgcagttgcaatttataatgctgtcaacattctaactatacccagtactaggcatctctgaggcagtattacattcatgtctggaccttttctgtcggcagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacgggaaacaggattgggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaacagactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctggtccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagaggtaaggaccaaccctcaaggccagtttcctagacacagattaagtttgggcctgtattcactaagggtccgatttaggaaattacgcctttcctatatactttttagtagttggtattcagagtaaccttattaaggtgcgtaacaggctttgtaggcgtggttcacttgcgcacgccaaataagtgtaattgaactgctagaaacctccccactggctggccaacagatgttctcgtggagtttttattcaatagggttttcagtacatttgtcttaataagtcatccctttaaatacagtacaccttttcactttggtttttgtcaacagactcaatagaatatattgagagaacgggttcagaatagtatggatcaatgaaggaaagatatctaaatatatgcatatttgtctccgtttcaacaccagttggtagatttaaaaaaaatactctgatcttgtaggttatttagggttaggaaagtatttatgaatcataaaaaaatagcttggagagcctttcggcatgaaagaaagtaaacagtggtttgattcattctaaaaattgccacactcacttatttaacctggggtaatgttggaatatttgtgtacaataactatacccacatctattgcctgcaccaaccatggaactgggtgatgacacagccaagtatggtgccatacatcgggttcaaactgctgtcttaatcagtgttccgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912541 lncRNA downstream 12744 18566728 ~ 18617969 (-) True G1671576
TU1912554 lncRNA downstream 15752 18609444 ~ 18614961 (-) True G1671581
TU1912528 lncRNA downstream 17273 18522855 ~ 18613440 (-) False G1671565
TU1912529 lncRNA downstream 17273 18555344 ~ 18613440 (-) True G1671565
TU1912543 lncRNA downstream 20240 18552175 ~ 18610473 (-) False G1671576
TU1912560 lncRNA upstream 10475 18653359 ~ 18658883 (-) True G1671587
TU1912561 lncRNA upstream 11058 18653942 ~ 18661852 (-) True G1671588
TU1912564 lncRNA upstream 22967 18665851 ~ 18680764 (-) True G1671591
TU1912361 lncRNA upstream 31460 18674344 ~ 18738941 (-) True G1671469
TU1912565 lncRNA upstream 37364 18680248 ~ 18686044 (-) True G1671592
XR_005037950.1 mRNA downstream 246255 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 250455 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 250456 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 250458 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 111210 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 111210 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 111210 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 111210 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 111210 18754094 ~ 18887492 (-) True LOC110498770
TU1912547 other downstream 6126 18565870 ~ 18624587 (-) True G1671578
TU1912546 other downstream 13573 18565870 ~ 18617140 (-) False G1671578
TU1912551 other downstream 30597 18594260 ~ 18600116 (-) False G1671580
TU1912502 other downstream 215249 18409124 ~ 18415464 (-) False G1671550
TU1912503 other downstream 220949 18409124 ~ 18409764 (-) True G1671550
TU1912688 other upstream 411246 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 683930 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 789255 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 1606575 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1977858 20620742 ~ 20670417 (-) False G1672588

Expression Profile