RNA id: TU1912557



Basic Information


Item Value
RNA id TU1912557
length 341
RNA type TUCP
GC content 0.56
exon number 2
gene id G1671584
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18631507 ~ 18632087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacgggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggatagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactctgtgccaagtgaagctgcatgcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1912541 lncRNA downstream 13538 18566728 ~ 18617969 (-) True G1671576
TU1912554 lncRNA downstream 16546 18609444 ~ 18614961 (-) True G1671581
TU1912528 lncRNA downstream 18067 18522855 ~ 18613440 (-) False G1671565
TU1912560 lncRNA upstream 21272 18653359 ~ 18658883 (-) True G1671587
TU1912561 lncRNA upstream 21855 18653942 ~ 18661852 (-) True G1671588
TU1912564 lncRNA upstream 33764 18665851 ~ 18680764 (-) True G1671591
TU1912361 lncRNA upstream 42257 18674344 ~ 18738941 (-) True G1671469
TU1912565 lncRNA upstream 48161 18680248 ~ 18686044 (-) True G1671592
XR_005037950.1 mRNA downstream 247049 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 251249 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 251250 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 251252 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 122007 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 122007 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 122007 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 122007 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 122007 18754094 ~ 18887492 (-) True LOC110498770
TU1912547 other downstream 6920 18565870 ~ 18624587 (-) True G1671578
TU1912546 other downstream 14367 18565870 ~ 18617140 (-) False G1671578
TU1912551 other downstream 31391 18594260 ~ 18600116 (-) False G1671580
TU1912502 other downstream 216043 18409124 ~ 18415464 (-) False G1671550
TU1912503 other downstream 221743 18409124 ~ 18409764 (-) True G1671550
TU1912549 other upstream 6294 18638381 ~ 18642884 (-) True G1671580
TU1912688 other upstream 422043 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 694727 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 800052 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 1617372 20249459 ~ 20251165 (-) True G1672381

Expression Profile