RNA id: TU1912564


Basic Information

Item Value
RNA id TU1912564
length 378
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1671591
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18665851 ~ 18680764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcatactagtgtatgagcaaaatgtctgcactgatattcctaaattttggcccattccacctgacagctggtgtaactgagtcaggtttgtcggcctctttgctcgcacacgctttctcagttctgcccacaaatgttctataggattgaggtcagggctctgtgatgacaactccaataccttgactttgttgtccttatgccatttttccacaactttttcggtccgagaaccttctagagccacgtacctcaccacgcactatcgacctggggtctagaacaggtttctaaagtttcgtaactctaggtctgacggttcttttttagctcgaacaaagctaactaatgaaggcagtgtatgtctctacgcacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912561 lncRNA downstream 3999 18653942 ~ 18661852 (-) True G1671588
TU1912560 lncRNA downstream 6968 18653359 ~ 18658883 (-) True G1671587
TU1912541 lncRNA downstream 47882 18566728 ~ 18617969 (-) True G1671576
TU1912554 lncRNA downstream 50890 18609444 ~ 18614961 (-) True G1671581
TU1912528 lncRNA downstream 52411 18522855 ~ 18613440 (-) False G1671565
TU1912363 lncRNA upstream 67340 18748104 ~ 18748969 (-) True G1671471
TU1912354 lncRNA upstream 69780 18750544 ~ 18751081 (-) True G1671462
TU1912347 lncRNA upstream 71176 18751940 ~ 18752644 (-) True G1671455
TU1912348 lncRNA upstream 71998 18752762 ~ 18753791 (-) True G1671456
TU1912358 lncRNA upstream 267898 18948662 ~ 18948997 (-) True G1671466
XR_005037950.1 mRNA downstream 281393 18383865 ~ 18384458 (-) True LOC118942047
XR_005037947.1 mRNA downstream 285593 18373778 ~ 18380258 (-) False LOC110512504
XR_005037948.1 mRNA downstream 285594 18373778 ~ 18380257 (-) False LOC110512504
XR_005037945.1 mRNA downstream 285596 18373777 ~ 18380255 (-) False LOC110512504
XM_036955914.1 mRNA upstream 73330 18754094 ~ 18879339 (-) False LOC110498770
XM_036955915.1 mRNA upstream 73330 18754094 ~ 18887206 (-) False LOC110498770
XM_036955912.1 mRNA upstream 73330 18754094 ~ 18887492 (-) False LOC110498770
XM_036955913.1 mRNA upstream 73330 18754094 ~ 18887492 (-) False LOC110498770
XM_036955916.1 mRNA upstream 73330 18754094 ~ 18887492 (-) True LOC110498770
TU1912552 other downstream 22967 18594053 ~ 18642884 (-) False G1671580
TU1912688 other upstream 373366 19054130 ~ 19073187 (-) True LOC110499154
TU1912865 other upstream 646050 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 751375 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 1568695 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1939978 20620742 ~ 20670417 (-) False G1672588

Expression Profile