RNA id: TCONS_00005991


Basic Information

Item Value
RNA id TCONS_00005991
length 866
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id XLOC_002555
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6036881 ~ 6037746 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctggggtccgcaggtctgatggactgccagtaagagatCTTCCCTCCTTCAttcagacatgctttagaaatgttgctgtcagtaaatgtcatgtgtcTCCATCAAgcaggtgtgatttactctgctttttCTGTCTGCAGGTGAACATCAAGTACATGTTGAAGGACCGGACCCCCGAGACactgaaagttgtatgttttgTGTGAGTCTATGGTGTTTGATTCAGTCctggatataatggagggtttgtcctgcaggaCGGTCAGGGTTGGCTGCCGCTTGAGGTGGCATTGATGACCCGCGTCACTTCAGCTCCTGctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacTGTACGTCTTGATCCTGGACCGTCTGGCTCCTTGTCAAGATCTTCAGAGCTTCTGtgagaacggctgtctggatgagcgTCTGGCCAAGAAAGTACTGGTGCAGCTGATGGCGGCGCTGAAACACTGCGAGAGCTGCGGCGTCCTGCACCAGGTCGTCAAGCCACAGAACCTGCCAGACAACCTCCacaggacatcaagctgctggacttcggctgtggagatctgctgaagcgaTCGGCTGCGTTTTGCAGGTGGGTTTGAGTTACAAAAGGGAACGTTCTGTTGATGTCTGTGAACGTCTGCTGATCAACTGAAGGGAATTTGTTTGTgcagatgtttgtggtcttcttGTGTCTCTCGGGCACTCCTGCTGAGTGGTTTCGCAGACATCTCTACAATGCCACTCAGCTACAGTGTGGTCAGAAGGAGTGACGCTCCTCTGTGACTGTTTCCCCTTCAGAGGCGCACGgagggtcacgtccagaagcagactgacctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005990 lncRNA downstream 181756 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005989 lncRNA downstream 246730 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00004744 lncRNA downstream 509517 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005988 lncRNA downstream 812939 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00005987 lncRNA downstream 814462 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00005992 lncRNA upstream 351523 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00004764 lncRNA upstream 535192 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005993 lncRNA upstream 572411 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00005994 lncRNA upstream 655768 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004778 lncRNA upstream 748762 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00004755 mRNA downstream 179333 5855259 ~ 5857548 (-) True XLOC_002553
TCONS_00004754 mRNA downstream 182019 5852359 ~ 5854862 (-) False XLOC_002552
TCONS_00004753 mRNA downstream 188977 5824335 ~ 5847904 (-) True XLOC_002551
TCONS_00004751 mRNA downstream 189226 5823759 ~ 5847655 (-) False XLOC_002551
TCONS_00004752 mRNA downstream 191966 5824288 ~ 5844915 (-) False XLOC_002551
TCONS_00004757 mRNA upstream 379610 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004758 mRNA upstream 379610 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004761 mRNA upstream 435346 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004762 mRNA upstream 483630 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004763 mRNA upstream 484821 6522567 ~ 6587066 (-) False XLOC_002560
TCONS_00004756 other downstream 86303 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004738 other downstream 1012596 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 1014467 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 1016381 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 2268115 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004759 other upstream 379959 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 434960 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 573329 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 584823 6622569 ~ 6623404 (-) False XLOC_002562
TCONS_00004767 other upstream 599984 6637730 ~ 6639167 (-) True XLOC_002562

Expression Profile

//