Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050232 |
| length | 1177 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | XLOC_025479 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 32416948 ~ 32424303 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005576 | extracellular region | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-130625-1 | Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PRRG2 (proline rich and Gla domain 2). |
| ensembl_id | ENSDART00000157324 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050230 | lncRNA | upstream | 2105 | 32411485 ~ 32414843 (+) | False | XLOC_025478 |
| TCONS_00050231 | lncRNA | upstream | 2105 | 32411878 ~ 32414843 (+) | True | XLOC_025478 |
| TCONS_00050222 | lncRNA | upstream | 26616 | 32389560 ~ 32390332 (+) | False | XLOC_025476 |
| TCONS_00052720 | lncRNA | upstream | 69455 | 32346134 ~ 32347493 (+) | True | XLOC_025475 |
| TCONS_00052719 | lncRNA | upstream | 119945 | 32293773 ~ 32297003 (+) | True | XLOC_025473 |
| TCONS_00050240 | lncRNA | downstream | 50519 | 32474661 ~ 32477285 (+) | True | XLOC_025481 |
| TCONS_00050249 | lncRNA | downstream | 108770 | 32532912 ~ 32535695 (+) | False | XLOC_025485 |
| TCONS_00052721 | lncRNA | downstream | 108770 | 32532912 ~ 32536378 (+) | False | XLOC_025485 |
| TCONS_00050250 | lncRNA | downstream | 110471 | 32534613 ~ 32536378 (+) | True | XLOC_025485 |
| TCONS_00052722 | lncRNA | downstream | 227555 | 32651697 ~ 32657133 (+) | False | XLOC_025492 |
| TCONS_00050227 | mRNA | upstream | 827 | 32410746 ~ 32416121 (+) | False | XLOC_025478 |
| TCONS_00050228 | mRNA | upstream | 2406 | 32411343 ~ 32414542 (+) | False | XLOC_025478 |
| TCONS_00050229 | mRNA | upstream | 2407 | 32411445 ~ 32414541 (+) | False | XLOC_025478 |
| TCONS_00050226 | mRNA | upstream | 9756 | 32403758 ~ 32407192 (+) | True | XLOC_025477 |
| TCONS_00050221 | mRNA | upstream | 15467 | 32365811 ~ 32401481 (+) | False | XLOC_025476 |
| TCONS_00050238 | mRNA | downstream | 1060 | 32425202 ~ 32458698 (+) | False | XLOC_025480 |
| TCONS_00050239 | mRNA | downstream | 19253 | 32443395 ~ 32461604 (+) | True | XLOC_025480 |
| TCONS_00050241 | mRNA | downstream | 53640 | 32477782 ~ 32490621 (+) | True | XLOC_025482 |
| TCONS_00050242 | mRNA | downstream | 68325 | 32492467 ~ 32518947 (+) | True | XLOC_025483 |
| TCONS_00050243 | mRNA | downstream | 102121 | 32526263 ~ 32531004 (+) | False | XLOC_025484 |
| TCONS_00050194 | other | upstream | 628311 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050187 | other | upstream | 813244 | 31600648 ~ 31603704 (+) | True | XLOC_025451 |
| TCONS_00050170 | other | upstream | 1722076 | 30694783 ~ 30694872 (+) | True | XLOC_025435 |
| TCONS_00050160 | other | upstream | 2167912 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
| TCONS_00050148 | other | upstream | 2762023 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050246 | other | downstream | 108454 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
| TCONS_00050254 | other | downstream | 147167 | 32571309 ~ 32571371 (+) | True | XLOC_025487 |
| TCONS_00050265 | other | downstream | 237849 | 32661991 ~ 32663746 (+) | False | XLOC_025493 |
| TCONS_00050268 | other | downstream | 247048 | 32671190 ~ 32671963 (+) | False | XLOC_025494 |
| TCONS_00050288 | other | downstream | 418652 | 32842794 ~ 32848026 (+) | False | XLOC_025502 |
