RNA id: TU1912824


Basic Information

Item Value
RNA id TU1912824
length 423
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1671830
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19255051 ~ 19255473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctacaactaaactctctgtgaagtgaaagaggtatggactgtaggtgcgagtaaggatgacaacagacagaatgtggtaccgtttacaaggactttattcctttacacggtaatatggggaaaaggggctggacggaaccaaagcaaagaaagtaaatctcaaagcccccccctctcctatcttacctgcctacccactacttacctaatttagcaccacctggtgccctaaccaaaatacagggggtggtccgcccaggtcttacctagtgtgcctagacagtgaatatactacgggtatatgtatgcccgcgggcctcttgcctaaactcTCCCAAAGTGCCTTCcacttcccccctgggaacaaatgaaacaggatattaaacaatttcacaaacaaaggacatcaaataagctctacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912823 lncRNA downstream 303 19254122 ~ 19254748 (-) True G1671829
TU1912760 lncRNA downstream 2041 19241068 ~ 19253010 (-) True G1671776
TU1912747 lncRNA downstream 103255 19151446 ~ 19151796 (-) True G1671767
TU1912739 lncRNA downstream 113266 19141558 ~ 19141785 (-) True G1671759
TU1912735 lncRNA downstream 118680 19135876 ~ 19136371 (-) True G1671755
TU1912825 lncRNA upstream 990 19256463 ~ 19256852 (-) True G1671831
TU1912843 lncRNA upstream 44485 19299958 ~ 19304097 (-) False G1671848
TU1912844 lncRNA upstream 44485 19299958 ~ 19304097 (-) True G1671848
TU1912883 lncRNA upstream 77931 19333404 ~ 19334931 (-) True G1671877
TU1912857 lncRNA upstream 128517 19383990 ~ 19397036 (-) False G1671856
XM_021576105.2 mRNA downstream 159718 19054126 ~ 19095333 (-) False LOC110499154
XM_021576104.2 mRNA downstream 181839 19054126 ~ 19073212 (-) False LOC110499154
XM_036955917.1 mRNA downstream 251218 18914789 ~ 19003833 (-) False LOC110499157
XM_036955925.1 mRNA upstream 7518 19262991 ~ 19277103 (-) False LOC110499148
XM_021576092.2 mRNA upstream 7518 19262991 ~ 19277123 (-) False LOC110499148
XM_021576093.2 mRNA upstream 7518 19262991 ~ 19277123 (-) True LOC110499148
XM_036955926.1 mRNA upstream 21798 19277271 ~ 19294617 (-) False LOC110499147
XM_021576091.2 mRNA upstream 21798 19277271 ~ 19294949 (-) True LOC110499147
TU1912688 other downstream 181864 19054130 ~ 19073187 (-) True LOC110499154
TU1912550 other downstream 612167 18630713 ~ 18642884 (-) False G1671580
TU1912549 other downstream 612167 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 622964 18631507 ~ 18632087 (-) True G1671584
TU1912551 other downstream 654935 18594260 ~ 18600116 (-) False G1671580
TU1912865 other upstream 71341 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 176666 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 993986 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1365269 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 1473802 20729275 ~ 20730072 (-) True G1672649

Expression Profile