RNA id: TU1912844


Basic Information

Item Value
RNA id TU1912844
length 4116
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1671848
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19299958 ~ 19304097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAACCGGACTGGATTTTGTTAAAAATGTTACATTTAAAGAAACTGCATTGGTAGACAAAATtccaaaatataaaataaataaaagcaaaaAGGACATCAGACAAAAAGTTCTCTTTCTCCACAGTCTCCATTGACAATAATCACATTTGACATTAATACTGTTGATAAATTAATACAGTTAAAATAACTGTTAATAGTTGACATTTTCAGTACGtctaaatgtgtatgtgtgtatgtttataaATGCATGCAGGTGTTACAGATTAACTATGGCAGAATGAGCCAGGATTCAAATGATCCTTTTCATTTTGCTCGTGGAGTTTTAGTTTGAGTTGATCCTAAATCCAAGGTTGGGGTATGCAGTTTTGTTCAGTTTTCATTTGACAAAGAGTGTATGTTAATTTGAGGTTAACTTTAAGctagttctttttttttttttttagctagaCCTACTGTTAAATTGACATGACAGGATACAAAAACAACATAAAAACAAAGCATGATTAGAGAATACTTCTAGTTGCAGACCCACTGTTCCACACAAAAAATCTACACCTAACACAGAGCCATGCCTTCCCTATGCTCTCCAACCATGCACCAAATACACTTGCACTAACACAGAGGTCAGACAAATTCCAGTACATAACAATCTCTAGTACAATGCATGCTCTCATGTTTTTACGTGCCAGAATGAGAGTATTTTTTTGCAGATTTGTTAAAATTGCACAAATATCTGAATAGTACAGTGATGGGGGAACACTTTCTTTTTTTGCAATGATCGTTTTTATCCGAATAAAAAGTTCCCTTTCAAAATCGGATGAATCAATCTGCAAgtataaacaaaacaaataaatgtCAAAAGGAGACATTTGGGTACACTGAACGTAAAAATAAGTGCTTCAAAAGTGAATGCAAACAATACAGTAAAACAACTGTCAGTATAGTTATCATGGCATCAAAATAAACAGCATAAATTGCCTTAAACATGCAATTCAAGAGAGAAAGCCAAATAAACGTGGCTTATGCAGTCGCCGTTTTTCCAAAAGAAAAAAGCACTGCTGGTTTTTACTAAGATATACTGGGGCACTGCTTTGATTACAACTACGGTCTCCTTTTCTCTGCCTCGGTTGTGGGATAAACTTACAAAGCCAACCACACCTACAGTCTACACACATTTCAGGAAAGAAAACCGGAAGAATGCAGCGACAGGCAAAGGTTCAGGAGCTACAGGGGTCAATACGGGAGGCTTGGTTCAAAAGTATTGGCATTAAAAGAAAAGGAGTTAAGTTTGATAATCTGCATTATACATGAACAAACAGGCCTTAGTCTTGACGACAGAATAGACTCGTAAAGGTCTATTCCAGGGGGCTTTTTCCTCTCACTGACTAATAATGGGAGATTGAACCAACCGAGGACCACTCAATGCGAGTCCCTCTGTGTCTTGTAGATTTTCATTTCCGATATGAGCCTCATAAACCACGGGGGAGGGGGGGACAACTGTGCACAACACAGGTCAAAGGCACAACACTGGACACGACAAAGGGAAATAGAACAACCTCTGGGAGCTTTGAAAAAGGCCCAAAGAGGAGAAGGTGTCTCTCTATCAGACAGTCAGGCATTCTTCTAGCAGCACAGTCTGTGCACTACTGCACTTTTGTCCCAGTTTCGTAGTAGAATTGCACAACATCCACTCCAAGAGGAGAAATAAAAGTCATAGCAACATTGTCAGAGCTCTAGAGTCTGATAAAACAGTCATGGAGCATGACAACAGCACAGGTAATTATTTGTGTGTTTTAAGCCGAACGCATTCTTAAATCATGCTGATATAACATAATTGCACCAAATATTCATTATACACAGGAAAAGGTGTATGGATTTTGTGACGCCAGTAAAACAAAAATGATGTGATATTGGTTACCTGTGGGGTACTTCTTTTAAGTACACAGTCAGATTGACCGAATAAATTGAACTTTTCAGAAGTATTACAACTGGGACAATGATATGTGAATAATAAGAGGTATACTCCAGACAAGCTAGGTACCCATCACTGTTGGTTGGCACAGAGGGATGTGACACTGTGAGAAACAAGGTATAATTTCCTTATTTTCCCCCAATGTAACAAATCGAAAGCTGAAGTCACATCCATGCAGAATTTTCAGTACCCAATGTTCCTGTGGTTACGTCTACTCTATAAAAAGATCCAAACGTATGCATTTAAAACATTCCTTTCAGCATACTCTAGAATTAACACAGTAAATACTGCAAAATGTTAAGCAAAGCTGTTAACTGAATGTACACCAAGGTGTGTAACAGGCAAATGCAGAGTGAGTGGCATTTGGCATGAAAATTAAATGCCAGAGGCATTGCCAGAGGGAAAAGGGGCCCTAGGCTTTGAGGCATCATACAGATGGATACAAGTCCAACAGGGTCACAAGACCACTGTATAGGACACATACCATCTTTCGATGTCAAATAAAAGCTTATTCAATAACCCGTCTCTTTAATCTCCGATTACAATTCTAAGATATGCAAGAGAACATAATAGTATATCTGCGAGAAGGATCATTTGAAAGGGTTATAGGtaacaaaaaaaatctacttAGAAGTTGTGTCGCTGAAAAACGGGGTCGCTGATCATAATTTTAATAATTGATGAATAGCAGAGGCACTACATACACAAACGTACACCTTTGTCATTGGGGGAAACACCTCAGGAAAATTGGTTTAGGAGTGATATTTCCTCGCTCAACGGAATAGAACTCACCATACTACACAAATATAACAACTATGAAACAGAAATGAATAACTACATCATTTgcattcattttttttctccatataATTTCattatatatagatttatattcCTCACATGCCTGACaattgtgtacatgtgtgtgtggtttagtCTTTTAAGTTGTGTGTTTTCTTTTGCACGGAAACATCCTTAGTACGGCTGTAAGAAAATATGTGCCCTCCTGGTGAGAAAGGACTTTGACCCGAgccaaaaataaaatgtgtgTGATGGATGCTCAGCAGTGGAAGTCACTGATGAACTACGGTGGGGTGGAGCCTCTGTTAGACAAGGGTCTGTATCTCCCCACTATCGTCTGGTCTTATTGGGCAAGAGTTGCTGTGAGACCAGGACTGACTGCACAAGAAGACCAAAAGAGAGATGCTGTAGAACAGGGGTGTTCAAATTTTACCCAACGAGGTCCGGACTACTGCTggctttctgttctacctgattattaattgcacccacctggtgtcccaggttaAAAATCAGTCCACGATTAGAGgggaagaaaaacaaaaaaaagcagtagaactggctttgaggtccagatttgaatttgagGGCTGTAGAATATTCCTGTGACTTACTTCTCTGTCCTTAGCCCCACCTCTCGGCTTTCAGCCTCCCAAGCAACTATGAACTGTCTTAGCGCTCCAGCTGTGGAGATGTAAGGACTAGGAGTGGAGGTCAGAGGGTGAGCTATGTTGCTTACAGCATCCTCTCACCCAATAGGTGAATCTTCAGGGTTGTAGAAGGGGGCAGGTCACAGTCAGTAGATTTTTCGGCTTTCTTTTTTTGTCcttttaaagtcctgaggagattTCCACCAAGTCAACAAAGCCAGACAGAAAAGGAAACGCCTCCCCATTAGCTGTGTGATCACCTGAATGAGGACAGTGACAATGATTTAGCTCTGTGTGGATGTACTATGGACAAGATGGGGGCTATGATCAGGGGCAAAACCGGAATCTTCAAAATCAAACTTATGACAAAAAGTATTACATTTAATAATAAATACTCTATTGTCATCTCTTCAGAATCCCTCAAAATGTTCACACGAATATAACTGAGAATAAGAAATGGCAATGGGGTTATGTTGTAGCACTGTAGGCGAGGAGGatgggaaccccccccccccactgtggaaaggcacaccaagaggagggagaggtgaaaGGAGGAGTCGGGCTGGTGGTGGAAGGGGTAAAGATATGAACCATGGCTGAGGTGGTGCAGGAGACGTCTGGAAATGTCACATGAGCTGAGAAGGGTGAGCTCAGGCCTGGGAGTCTCTTTACATCCGTGAACCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1912825 lncRNA downstream 43106 19256463 ~ 19256852 (-) True G1671831
TU1912824 lncRNA downstream 44485 19255051 ~ 19255473 (-) True G1671830
TU1912823 lncRNA downstream 45210 19254122 ~ 19254748 (-) True G1671829
TU1912760 lncRNA downstream 46948 19241068 ~ 19253010 (-) True G1671776
TU1912747 lncRNA downstream 148162 19151446 ~ 19151796 (-) True G1671767
TU1912883 lncRNA upstream 29307 19333404 ~ 19334931 (-) True G1671877
TU1912857 lncRNA upstream 79893 19383990 ~ 19397036 (-) False G1671856
TU1912856 lncRNA upstream 80006 19384103 ~ 19397036 (-) True G1671856
TU1912853 lncRNA upstream 94605 19398702 ~ 19478436 (-) True G1671855
TU1913021 lncRNA upstream 342763 19646860 ~ 19647148 (-) True G1672002
XM_021576091.2 mRNA downstream 5009 19277271 ~ 19294949 (-) True LOC110499147
XM_036955926.1 mRNA downstream 5341 19277271 ~ 19294617 (-) False LOC110499147
XM_021576092.2 mRNA downstream 22835 19262991 ~ 19277123 (-) False LOC110499148
XM_021576093.2 mRNA downstream 22835 19262991 ~ 19277123 (-) True LOC110499148
XM_036955925.1 mRNA downstream 22855 19262991 ~ 19277103 (-) False LOC110499148
XR_002469923.2 mRNA upstream 18 19304115 ~ 19305599 (-) True LOC110499150
XR_005037952.1 mRNA upstream 1553 19305650 ~ 19308476 (-) False LOC110499146
XR_002469922.2 mRNA upstream 1553 19305650 ~ 19312301 (-) True LOC110499146
XM_021576085.2 mRNA upstream 57519 19361616 ~ 19376231 (-) False LOC110499144
XM_036955929.1 mRNA upstream 57519 19361616 ~ 19376232 (-) True LOC110499144
TU1912688 other downstream 226771 19054130 ~ 19073187 (-) True LOC110499154
TU1912550 other downstream 657074 18630713 ~ 18642884 (-) False G1671580
TU1912549 other downstream 657074 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 667871 18631507 ~ 18632087 (-) True G1671584
TU1912551 other downstream 699842 18594260 ~ 18600116 (-) False G1671580
TU1912865 other upstream 22717 19326814 ~ 19406931 (-) True G1671859
TU1912901 other upstream 128042 19432139 ~ 19435041 (-) True G1671895
TU1913435 other upstream 945362 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 1316645 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 1425178 20729275 ~ 20730072 (-) True G1672649

Expression Profile