RNA id: TU1913161


Basic Information

Item Value
RNA id TU1913161
length 1402
lncRNA type read_through
GC content 0.41
exon number 2
gene id G1672119
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19905197 ~ 19970513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacagacagattatttcacttataattcactgtatcacaattacagtggatcagaagtttacatacactaagttgactgcggctttaacagcttggaaaattccagaaaatgatgtcatggctttataggcttctgataggctaattgacatcatttgagtcaattggaggtttacctgtggatgtatttcaatgcctaccttcaaactcaatgcctctttccttgacctcaaaatcaaaagaaatcagccaagacctcagaaaaagaattgtagacctccacaagtctggttcatccatgggagcaatttccaaacgccagaaggtaccatgttcatctgtacaaacaataagtataagtataagtaagtataaacaccatggaaccacacagccgtcataccgctcaggaaggagacgcgttctgtctcctagagatgaacgtacattggtgcgaaaagtgcaaatcaatcccagaacaacagcaaagtaccttgtgaagatgctggaagaaacaggtacaaaagtatctatatccacagtaaaatgagtcctatatcgacataacctaaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcaactgcacataggaacgaagattgtactttttggagaaatgtcctatggCCTGATTAAACAAAAgtcgaactgtttggccataatgacctctgttatttttggaggaaaaaggggatgcttgcaagccaaagaacaccatcccaactgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggaggaaaattatgtggatacattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaggttgtggcaaaatggcttaaggagatTTTggatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcccatagaaaatgtgtgggcagaactgaaaaagcatgtgaaagcaaggaggcctacaaacatgactcagttacaccagctctgtcaggaggaatgggacaaaatccacccaacttattgtgggaagcctttGGAAGGCTTCCTGAAACGTGTgaatccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaagaaataattctctgctattattttgacatttcacattcttaaaataaggtggtgatcctaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913091 lncRNA downstream 162244 19742569 ~ 19742953 (-) True G1672063
TU1913066 lncRNA downstream 193435 19711504 ~ 19711762 (-) True G1672041
TU1913042 lncRNA downstream 220919 19683951 ~ 19684278 (-) True G1672023
TU1913025 lncRNA downstream 255967 19649021 ~ 19649230 (-) True G1672006
TU1913023 lncRNA downstream 257130 19647840 ~ 19648067 (-) True G1672004
TU1913343 lncRNA upstream 144028 20114541 ~ 20129012 (-) True G1672294
TU1913416 lncRNA upstream 256691 20227204 ~ 20230281 (-) True G1672363
TU1913465 lncRNA upstream 316906 20287419 ~ 20334652 (-) True G1672410
TU1913476 lncRNA upstream 327031 20297544 ~ 20300668 (-) True LOC110499118
TU1913477 lncRNA upstream 342754 20313267 ~ 20314911 (-) True G1672414
XM_021576049.2 mRNA downstream 6877 19886553 ~ 19898320 (-) True LOC110499125
XM_021576048.2 mRNA downstream 7240 19886553 ~ 19897957 (-) False LOC110499125
XM_021576050.2 mRNA downstream 7241 19886553 ~ 19897956 (-) False LOC110499125
XM_036955943.1 mRNA downstream 7854 19886553 ~ 19897343 (-) False LOC110499125
XM_036955944.1 mRNA downstream 8130 19886553 ~ 19897067 (-) False LOC110499125
XM_021576042.2 mRNA upstream 42560 20013073 ~ 20126587 (-) True LOC110499121
trnaa-ugc-145 mRNA upstream 196123 20166636 ~ 20166705 (-) True trnaa-ugc-145
XM_021576037.2 mRNA upstream 327031 20297544 ~ 20308719 (-) False LOC110499118
XM_021576039.2 mRNA upstream 327031 20297544 ~ 20308719 (-) False LOC110499118
XM_036955948.1 mRNA upstream 327031 20297544 ~ 20308719 (-) False LOC110499118
TU1912901 other downstream 470156 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 498266 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 832010 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1262313 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1273110 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 278946 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 650229 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 758762 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1618516 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1865820 21836333 ~ 21844793 (-) True G1673740

Expression Profile