RNA id: TU1913416


Basic Information

Item Value
RNA id TU1913416
length 278
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1672363
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20227204 ~ 20230281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaggagaggagatgaggaaagaaAACCCCCTTTAGACTGTTGAGATGCACTCGCTCTGTCAAATCAGTAGTACATGTTCTCAAAAAAAATTTAATGTTATTGTTGTCCaatgaaatAGTTGCCAGGAGGTGGCCACACCCCTCACCTTGCATGCCAGGTTCTCCACCAATGCGATCATGGAGTTCTTAAAGAGGGTGGCGGCCGTTAGGGGTCGTTTGGTGACCTCAGTGATACTCAGCTTGCCCTCCGGCCACATCATCTTCAGCACTGGGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913343 lncRNA downstream 98192 20114541 ~ 20129012 (-) True G1672294
TU1913222 lncRNA downstream 185947 19943973 ~ 20041257 (-) True G1672173
TU1913161 lncRNA downstream 256691 19905197 ~ 19970513 (-) True G1672119
TU1913157 lncRNA downstream 259039 19884508 ~ 19968165 (-) True G1672115
TU1913218 lncRNA downstream 287504 19938149 ~ 19939700 (-) True G1672171
TU1913465 lncRNA upstream 57138 20287419 ~ 20334652 (-) True G1672410
TU1913476 lncRNA upstream 67263 20297544 ~ 20300668 (-) True LOC110499118
TU1913477 lncRNA upstream 82986 20313267 ~ 20314911 (-) True G1672414
TU1913584 lncRNA upstream 270122 20500403 ~ 20500608 (-) True G1672518
TU1913585 lncRNA upstream 271487 20501768 ~ 20501975 (-) True G1672519
trnaa-ugc-145 mRNA downstream 60499 20166636 ~ 20166705 (-) True trnaa-ugc-145
XM_021576042.2 mRNA downstream 100617 20013073 ~ 20126587 (-) True LOC110499121
XM_036955946.1 mRNA downstream 265848 19941466 ~ 19961356 (-) False LOC110499122
XM_021576045.2 mRNA downstream 266465 19941705 ~ 19960739 (-) True LOC110499122
XM_021576047.2 mRNA downstream 313334 19907335 ~ 19913870 (-) True LOC110499124
XM_021576037.2 mRNA upstream 67263 20297544 ~ 20308719 (-) False LOC110499118
XM_021576039.2 mRNA upstream 67263 20297544 ~ 20308719 (-) False LOC110499118
XM_036955948.1 mRNA upstream 67263 20297544 ~ 20308719 (-) False LOC110499118
XM_036955950.1 mRNA upstream 67263 20297544 ~ 20308719 (-) False LOC110499118
XM_036955951.1 mRNA upstream 67263 20297544 ~ 20308719 (-) False LOC110499118
TU1912901 other downstream 792163 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 820273 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 1154017 19054130 ~ 19073187 (-) True LOC110499154
TU1912549 other downstream 1584320 18638381 ~ 18642884 (-) True G1671580
TU1912557 other downstream 1595117 18631507 ~ 18632087 (-) True G1671584
TU1913435 other upstream 19178 20249459 ~ 20251165 (-) True G1672381
TU1913660 other upstream 390461 20620742 ~ 20670417 (-) False G1672588
TU1913728 other upstream 498994 20729275 ~ 20730072 (-) True G1672649
TU1914775 other upstream 1358748 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1606052 21836333 ~ 21844793 (-) True G1673740

Expression Profile