RNA id: TU1913692


Basic Information

Item Value
RNA id TU1913692
length 234
lncRNA type read_through
GC content 0.35
exon number 2
gene id G1672618
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20671156 ~ 20773751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatacaggtaacgagtgtaggacagaggagcctcttcaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaatacattcataaaaaaatcatacaatgtgattttctggattttttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatcttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913661 lncRNA downstream 1093 20620742 ~ 20670063 (-) True G1672588
TU1913647 lncRNA downstream 73484 20597437 ~ 20597672 (-) True G1672578
TU1913634 lncRNA downstream 96625 20574305 ~ 20574531 (-) True G1672566
TU1913624 lncRNA downstream 108008 20562914 ~ 20563148 (-) True G1672557
TU1913613 lncRNA downstream 137247 20533481 ~ 20533909 (-) True G1672546
TU1913776 lncRNA upstream 37410 20811161 ~ 20811373 (-) True G1672696
TU1913828 lncRNA upstream 101880 20875631 ~ 20875869 (-) True G1672743
TU1913835 lncRNA upstream 106327 20880078 ~ 20880415 (-) True G1672750
TU1913845 lncRNA upstream 123001 20896752 ~ 20896993 (-) True G1672760
TU1913849 lncRNA upstream 139315 20913066 ~ 20913535 (-) True G1672764
XM_021576034.2 mRNA downstream 263807 20368996 ~ 20407349 (-) True LOC110499116
XM_021576038.2 mRNA downstream 362382 20297544 ~ 20308774 (-) False LOC110499118
XM_036955953.1 mRNA downstream 362437 20297544 ~ 20308719 (-) False LOC110499118
XM_021576021.2 mRNA upstream 88599 20862350 ~ 20872069 (-) True LOC110499109
XM_036955542.1 mRNA upstream 181448 20955199 ~ 20957806 (-) True LOC118941997
XM_036955555.1 mRNA upstream 204472 20978223 ~ 20979539 (-) True LOC118942009
XM_021576014.2 mRNA upstream 417860 21191611 ~ 21214250 (-) False LOC110499105
XM_021576011.2 mRNA upstream 417860 21191611 ~ 21214251 (-) False LOC110499105
TU1913660 other downstream 739 20620742 ~ 20670417 (-) False G1672588
TU1913435 other downstream 419991 20249459 ~ 20251165 (-) True G1672381
TU1912901 other downstream 1236115 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 1264225 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 1597969 19054130 ~ 19073187 (-) True LOC110499154
TU1914775 other upstream 815278 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1062582 21836333 ~ 21844793 (-) True G1673740
TU1915580 other upstream 1557599 22331350 ~ 22331806 (-) True G1674299
TU1915780 other upstream 1612572 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other upstream 1612572 22386323 ~ 22388478 (-) False LOC118942052

Expression Profile