RNA id: TU1913728


Basic Information

Item Value
RNA id TU1913728
length 582
RNA type TUCP
GC content 0.55
exon number 3
gene id G1672649
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20729275 ~ 20730072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGAGGCTCGGTCAGGTGGATCTGCATGACGGTGATGAGACTGGCGTCCAGGTAGTCCGTCTCAGGCTCTTTGCAGTAGAGCACCTCCACTGGATAGGTGCGTCCTGGAATGGTAAAGATGGGCGCTTCGTAGAAGTACTGGGAGAACTTGACGGCATCTAGCGTGGCTGAAGTGACAATCAGCTTCATGTCTGTGCGTTTCTGCACCGTCTTCTTGAGCAGACCGAAGAGCACATCGGTATGGATGGTCCTCTCGTGGGCCTCATCCAACATGATGATGGCGTACTGGCCAAGGTCCGGATCTATCAAACACTCTCTCAGCAACATACCGTCTGTCATGTACTTGATCACCGTCTCAGGGCTGGTGCAGTCCTCAAAACGGATGGTGTAGCCCACCTCCTGGCCAAGACAGCAACCGTACTCTTCAGAAACTCTCTTGGCCACAGACATGGCTGCCACACGACGGGGCTGAGTGCAGCCGATCTTCCCCCGAGTGGTGTAGCCCGCCTCGGCCAGGTACTGGGTGATCTGGGTAGTTTTCCCAGAACCAGTCTCTCCAATAACAATCAAGATCTGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913661 lncRNA downstream 59212 20620742 ~ 20670063 (-) True G1672588
TU1913647 lncRNA downstream 131603 20597437 ~ 20597672 (-) True G1672578
TU1913634 lncRNA downstream 154744 20574305 ~ 20574531 (-) True G1672566
TU1913624 lncRNA downstream 166127 20562914 ~ 20563148 (-) True G1672557
TU1913613 lncRNA downstream 195366 20533481 ~ 20533909 (-) True G1672546
TU1913776 lncRNA upstream 81089 20811161 ~ 20811373 (-) True G1672696
TU1913828 lncRNA upstream 145559 20875631 ~ 20875869 (-) True G1672743
TU1913835 lncRNA upstream 150006 20880078 ~ 20880415 (-) True G1672750
TU1913845 lncRNA upstream 166680 20896752 ~ 20896993 (-) True G1672760
TU1913849 lncRNA upstream 182994 20913066 ~ 20913535 (-) True G1672764
XM_021576034.2 mRNA downstream 321926 20368996 ~ 20407349 (-) True LOC110499116
XM_021576038.2 mRNA downstream 420501 20297544 ~ 20308774 (-) False LOC110499118
XM_036955953.1 mRNA downstream 420556 20297544 ~ 20308719 (-) False LOC110499118
XM_021576022.2 mRNA upstream 36051 20766123 ~ 20807358 (-) False LOC110499110
XM_036955959.1 mRNA upstream 36051 20766123 ~ 20807510 (-) True LOC110499110
XM_021576021.2 mRNA upstream 132278 20862350 ~ 20872069 (-) True LOC110499109
XM_036955542.1 mRNA upstream 225127 20955199 ~ 20957806 (-) True LOC118941997
XM_036955555.1 mRNA upstream 248151 20978223 ~ 20979539 (-) True LOC118942009
TU1913660 other downstream 58858 20620742 ~ 20670417 (-) False G1672588
TU1913435 other downstream 478110 20249459 ~ 20251165 (-) True G1672381
TU1912901 other downstream 1294234 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 1322344 19326814 ~ 19406931 (-) True G1671859
TU1912688 other downstream 1656088 19054130 ~ 19073187 (-) True LOC110499154
TU1914775 other upstream 858957 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 1106261 21836333 ~ 21844793 (-) True G1673740
TU1915580 other upstream 1601278 22331350 ~ 22331806 (-) True G1674299
TU1915780 other upstream 1656251 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other upstream 1656251 22386323 ~ 22388478 (-) False LOC118942052

Expression Profile