RNA id: TU1914008


Basic Information

Item Value
RNA id TU1914008
length 202
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1672917
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21088783 ~ 21088984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATCTTCAGAGGACCCTTGTCaatgtcttctggtctggacAACACTGGATTAAAGCTGCAGCCCTGTAACTGCCACTGCACGAGGGTGGACAAGGCCTGGTGGACATTTCCTCTAGAATCATGGCTTTCTGGCTCCAAGCAGCCCAGAGATTGTTGTACAGAGACGGTTCTAGCTGGGTCGAAACAGCCTACATATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914006 lncRNA upstream 191 21088335 ~ 21088592 (+) True G1672915
TU1913978 lncRNA upstream 26122 21062205 ~ 21062661 (+) True G1672888
TU1913972 lncRNA upstream 29023 21059415 ~ 21059760 (+) True G1672882
TU1913971 lncRNA upstream 30886 21057642 ~ 21057897 (+) True G1672881
TU1913967 lncRNA upstream 32294 21055801 ~ 21056489 (+) True G1672877
TU1914010 lncRNA downstream 1149 21090133 ~ 21090349 (+) True G1672919
TU1914013 lncRNA downstream 4742 21093726 ~ 21097480 (+) True G1672922
TU1914061 lncRNA downstream 45743 21134727 ~ 21134927 (+) True G1672968
TU1914079 lncRNA downstream 102653 21191637 ~ 21193964 (+) True G1672983
TU1914107 lncRNA downstream 123418 21212402 ~ 21213348 (+) True G1673011
XM_021576019.2 mRNA upstream 48672 21002651 ~ 21040111 (+) False LOC110499108
XM_021576020.2 mRNA upstream 48672 21002651 ~ 21040111 (+) True LOC110499108
XM_021576024.2 mRNA upstream 324701 20735432 ~ 20764082 (+) False LOC110499111
XM_036955958.1 mRNA upstream 324701 20748856 ~ 20764082 (+) True LOC110499111
XM_036955957.1 mRNA upstream 353444 20706399 ~ 20735339 (+) True LOC110499112
XM_021576017.2 mRNA downstream 65551 21154535 ~ 21168654 (+) False LOC110499107
XM_021576015.2 mRNA downstream 65553 21154537 ~ 21168654 (+) True LOC110499107
trnal-uag-53 mRNA downstream 139539 21228523 ~ 21228604 (+) True trnal-uag-53
XM_021576006.2 mRNA downstream 145227 21234211 ~ 21277617 (+) False LOC110499104
XM_036955960.1 mRNA downstream 153325 21242309 ~ 21277617 (+) False LOC110499104
TU1911957 other upstream 860615 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 1963547 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 2967616 18051611 ~ 18121167 (+) False G1670209
TU1914009 other downstream 419 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 51541 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 207388 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 227814 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 297345 21386329 ~ 21389778 (+) True G1673204

Expression Profile