RNA id: TU1914062


Basic Information

Item Value
RNA id TU1914062
length 241
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1672969
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21134689 ~ 21134929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccatgtagttctgagctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcttcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgtctattgtcctgtagcccattccagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913991 lncRNA downstream 57556 21071024 ~ 21077133 (-) True G1672900
TU1913970 lncRNA downstream 77114 21057367 ~ 21057575 (-) True G1672880
TU1913969 lncRNA downstream 77376 21057012 ~ 21057313 (-) True G1672879
TU1913959 lncRNA downstream 81872 21052483 ~ 21052817 (-) True G1672869
TU1913958 lncRNA downstream 83179 21051310 ~ 21051510 (-) True G1672868
TU1914259 lncRNA upstream 160077 21295006 ~ 21295318 (-) True G1673148
TU1914265 lncRNA upstream 170977 21305906 ~ 21306127 (-) True G1673154
TU1914266 lncRNA upstream 171768 21306697 ~ 21306988 (-) True G1673155
TU1914270 lncRNA upstream 177797 21312726 ~ 21312961 (-) True G1673159
TU1914274 lncRNA upstream 182306 21317235 ~ 21317460 (-) True G1673163
XM_036955555.1 mRNA downstream 155150 20978223 ~ 20979539 (-) True LOC118942009
XM_036955542.1 mRNA downstream 176883 20955199 ~ 20957806 (-) True LOC118941997
XM_021576021.2 mRNA downstream 262620 20862350 ~ 20872069 (-) True LOC110499109
XM_036955959.1 mRNA downstream 327179 20766123 ~ 20807510 (-) True LOC110499110
XM_021576022.2 mRNA downstream 327331 20766123 ~ 20807358 (-) False LOC110499110
XM_021576014.2 mRNA upstream 56682 21191611 ~ 21214250 (-) False LOC110499105
XM_021576011.2 mRNA upstream 56682 21191611 ~ 21214251 (-) False LOC110499105
XM_021576012.2 mRNA upstream 56682 21191611 ~ 21214251 (-) False LOC110499105
XM_021576013.2 mRNA upstream 56682 21191611 ~ 21214251 (-) False LOC110499105
XM_021576010.2 mRNA upstream 56682 21191611 ~ 21214252 (-) True LOC110499105
TU1913728 other downstream 404617 20729275 ~ 20730072 (-) True G1672649
TU1913660 other downstream 464272 20620742 ~ 20670417 (-) False G1672588
TU1913435 other downstream 883524 20249459 ~ 20251165 (-) True G1672381
TU1912901 other downstream 1699648 19432139 ~ 19435041 (-) True G1671895
TU1912865 other downstream 1727758 19326814 ~ 19406931 (-) True G1671859
TU1914775 other upstream 454100 21589029 ~ 21596186 (-) True phf5a
TU1914957 other upstream 701404 21836333 ~ 21844793 (-) True G1673740
TU1915580 other upstream 1196421 22331350 ~ 22331806 (-) True G1674299
TU1915780 other upstream 1251394 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other upstream 1251394 22386323 ~ 22388478 (-) False LOC118942052

Expression Profile