RNA id: TU1914069



Basic Information


Item Value
RNA id TU1914069
length 339
RNA type TUCP
GC content 0.45
exon number 2
gene id G1672973
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21140525 ~ 21191078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttaaagtttgccacaagccatctgggagatacaccaaacatgtggaagaaggtgctttggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttctttagcggcgacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatc

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1914061 lncRNA upstream 5598 21134727 ~ 21134927 (+) True G1672968
TU1914013 lncRNA upstream 43045 21093726 ~ 21097480 (+) True G1672922
TU1914010 lncRNA upstream 50176 21090133 ~ 21090349 (+) True G1672919
TU1914008 lncRNA upstream 51541 21088783 ~ 21088984 (+) True G1672917
TU1914006 lncRNA upstream 51933 21088335 ~ 21088592 (+) True G1672915
TU1914079 lncRNA downstream 559 21191637 ~ 21193964 (+) True G1672983
TU1914107 lncRNA downstream 21324 21212402 ~ 21213348 (+) True G1673011
TU1914137 lncRNA downstream 93702 21284780 ~ 21284990 (+) True G1673036
TU1914158 lncRNA downstream 120664 21311742 ~ 21312101 (+) True G1673057
TU1914299 lncRNA downstream 163485 21354563 ~ 21354777 (+) True G1673183
XM_021576019.2 mRNA upstream 100414 21002651 ~ 21040111 (+) False LOC110499108
XM_021576020.2 mRNA upstream 100414 21002651 ~ 21040111 (+) True LOC110499108
XM_021576024.2 mRNA upstream 376443 20735432 ~ 20764082 (+) False LOC110499111
XM_036955958.1 mRNA upstream 376443 20748856 ~ 20764082 (+) True LOC110499111
XM_036955957.1 mRNA upstream 405186 20706399 ~ 20735339 (+) True LOC110499112
trnal-uag-53 mRNA downstream 37445 21228523 ~ 21228604 (+) True trnal-uag-53
XM_021576006.2 mRNA downstream 43133 21234211 ~ 21277617 (+) False LOC110499104
XM_036955960.1 mRNA downstream 51231 21242309 ~ 21277617 (+) False LOC110499104
XM_036955961.1 mRNA downstream 51231 21242309 ~ 21277617 (+) False LOC110499104
XM_021576009.2 mRNA downstream 55263 21246341 ~ 21277617 (+) False LOC110499104
TU1914009 other upstream 50695 21089403 ~ 21089830 (+) True G1672918
TU1911957 other upstream 912357 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 2015289 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 3019358 18051611 ~ 18121167 (+) False G1670209
TU1914145 other downstream 105294 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 125720 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 195251 21386329 ~ 21389778 (+) True G1673204
TU1914311 other downstream 232439 21423517 ~ 21437381 (+) True LOC110499100
TU1914366 other downstream 253805 21444883 ~ 21450346 (+) False G1673231

Expression Profile