RNA id: TU1914145



Basic Information


Item Value
RNA id TU1914145
length 483
RNA type TUCP
GC content 0.53
exon number 1
gene id G1673044
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21296372 ~ 21296854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtcctcatcagacatcagtggcaacaacgttgcctatgggcacaaacccactgttgctggaccagacaggactggcaaaaagtgctcttcactgacgagtcgcggttttgtctcaccaggggtgatggtcggattcgcttttatcgtcaaaggaatgagcgttacaccgaggcctgtactctggagcgtgatctatttggaggtggagggtccatcatggtctggggcggtgtgtcacagcatcatcggactgagcttgttgtcattgcaggcaatctccacgctgtgcgttacaggaaagacatcctcctccctcatgtcgtacccttcctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagccatactgctcattctgtgcgtgatttcctgcaagacaagaatgtcattgttctgccatggccagcgaagagcccggatctcaatcccattgagcacttctggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1914137 lncRNA upstream 11382 21284780 ~ 21284990 (+) True G1673036
TU1914107 lncRNA upstream 83024 21212402 ~ 21213348 (+) True G1673011
TU1914079 lncRNA upstream 102408 21191637 ~ 21193964 (+) True G1672983
TU1914061 lncRNA upstream 161445 21134727 ~ 21134927 (+) True G1672968
TU1914013 lncRNA upstream 198892 21093726 ~ 21097480 (+) True G1672922
TU1914158 lncRNA downstream 14888 21311742 ~ 21312101 (+) True G1673057
TU1914299 lncRNA downstream 57709 21354563 ~ 21354777 (+) True G1673183
TU1914277 lncRNA downstream 85885 21382739 ~ 21383609 (+) True G1673166
TU1914315 lncRNA downstream 125362 21422216 ~ 21422971 (+) False LOC110499100
TU1914316 lncRNA downstream 125362 21422216 ~ 21423455 (+) False LOC110499100
XM_021576006.2 mRNA upstream 18755 21234211 ~ 21277617 (+) False LOC110499104
XM_036955960.1 mRNA upstream 18755 21242309 ~ 21277617 (+) False LOC110499104
XM_036955961.1 mRNA upstream 18755 21242309 ~ 21277617 (+) False LOC110499104
XM_021576009.2 mRNA upstream 18755 21246341 ~ 21277617 (+) False LOC110499104
XM_021576005.2 mRNA upstream 18755 21256242 ~ 21277617 (+) True LOC110499104
XM_021576002.2 mRNA downstream 35440 21332294 ~ 21377525 (+) True LOC110499103
XR_002469914.2 mRNA downstream 108668 21405522 ~ 21420610 (+) False LOC110499101
XM_021576000.2 mRNA downstream 108669 21405523 ~ 21420610 (+) True LOC110499101
XM_021575997.2 mRNA downstream 125314 21422168 ~ 21437402 (+) False LOC110499100
XM_021575998.2 mRNA downstream 125314 21422168 ~ 21437402 (+) False LOC110499100
TU1914069 other upstream 105294 21140525 ~ 21191078 (+) True G1672973
TU1914009 other upstream 206542 21089403 ~ 21089830 (+) True G1672918
TU1911957 other upstream 1068204 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 2171136 19095044 ~ 19125236 (+) False LOC110499153
TU1910976 other upstream 3186149 18051611 ~ 18110223 (+) False G1670209
TU1914164 other downstream 19944 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 89475 21386329 ~ 21389778 (+) True G1673204
TU1914311 other downstream 126663 21423517 ~ 21437381 (+) True LOC110499100
TU1914366 other downstream 148029 21444883 ~ 21450346 (+) False G1673231
TU1914367 other downstream 148029 21444883 ~ 21450346 (+) False G1673231

Expression Profile