RNA id: TU1914277



Basic Information


Item Value
RNA id TU1914277
length 849
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1673166
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21382739 ~ 21383609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGACCAAATCAGCTGGATTTTTCACGTAGAATGTTACTCTGATAAAATGGAGGCCATTGAAATCTATGCTCATAAAAAAGTGTGAAAGGTAGATATATTTCTGATGAGCAACCCAGGGTTACCAGGGGTAAATTGTGACAGAACGCAGTGGAATGAATTTCCTGTTTCTATTGGGAATTACCATAATGGAATAACAACCAATTTAACCCATGTGAATTTCAATCCATCTATTCACTGCATATAAGCATATAAGCTGTACATAACATTGAACCCAGTAGGCCACTAAAAacatgtatttccattcaaaTCTGAGTCTCACTGTACTGTTGTATGGGCATCATACTGTATGCAGATCTGGGAATGGGAGCTAAAGTAAGATCTGTCTTGTTGACAATGTGGGTTTGGTAATAGGAGACATAATACTTCCACATACAGATGATACCGTTCCCCTTTAGGACTGTGATGTCTGACTAGGGATATATTCTGCTTAGTTGTTAATCCAAGGCTGCCTCTTACTGCAGTGCTTGTAGTAGCAAAGCTGTCACCAGCTGAAGACTGAATCAACAGTCTAGTTTGGTACACAAAAAGACAACTAGACCAATGCATAACTCGTTATATGAATATACCTACTTCAGTCAAAAGTATACAGTGCAGTATTAAATGTACAAGATACTATGACCAAACATAATTATCTGATATAAGTGTGATATGTGTACGCTATTATGTGCTGAATAAGACCAAACTACTTATTTGTGTCTGTACATGCTGTATATGGAAATGTTCTTTGTTGAGGACTGTTTAACTTTTCGTTAACATTGACTTTTCAGATGAAGATGAAATATTATGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1914299 lncRNA upstream 27962 21354563 ~ 21354777 (+) True G1673183
TU1914158 lncRNA upstream 70638 21311742 ~ 21312101 (+) True G1673057
TU1914137 lncRNA upstream 97749 21284780 ~ 21284990 (+) True G1673036
TU1914107 lncRNA upstream 169391 21212402 ~ 21213348 (+) True G1673011
TU1914079 lncRNA upstream 188775 21191637 ~ 21193964 (+) True G1672983
TU1914315 lncRNA downstream 38607 21422216 ~ 21422971 (+) False LOC110499100
TU1914316 lncRNA downstream 38607 21422216 ~ 21423455 (+) False LOC110499100
TU1914393 lncRNA downstream 95023 21478632 ~ 21536718 (+) True G1673251
TU1914493 lncRNA downstream 237842 21621451 ~ 21621681 (+) True G1673333
TU1914494 lncRNA downstream 239599 21623208 ~ 21623435 (+) True G1673334
XM_021576002.2 mRNA upstream 5214 21332294 ~ 21377525 (+) True LOC110499103
XM_021576006.2 mRNA upstream 105122 21234211 ~ 21277617 (+) False LOC110499104
XR_002469914.2 mRNA downstream 21913 21405522 ~ 21420610 (+) False LOC110499101
XM_021576000.2 mRNA downstream 21914 21405523 ~ 21420610 (+) True LOC110499101
XM_021575997.2 mRNA downstream 38559 21422168 ~ 21437402 (+) False LOC110499100
XM_021575998.2 mRNA downstream 38559 21422168 ~ 21437402 (+) False LOC110499100
XM_021575999.2 mRNA downstream 38559 21422168 ~ 21437402 (+) False LOC110499100
TU1914164 other upstream 65327 21316798 ~ 21317412 (+) True G1673063
TU1914145 other upstream 85885 21296372 ~ 21296854 (+) True G1673044
TU1914069 other upstream 191661 21140525 ~ 21191078 (+) True G1672973
TU1914009 other upstream 292909 21089403 ~ 21089830 (+) True G1672918
TU1911957 other upstream 1154571 20227795 ~ 20228168 (+) True G1671091
TU1914333 other downstream 2720 21386329 ~ 21389778 (+) True G1673204
TU1914311 other downstream 39908 21423517 ~ 21437381 (+) True LOC110499100
TU1914366 other downstream 61274 21444883 ~ 21450346 (+) False G1673231
TU1914367 other downstream 61274 21444883 ~ 21450346 (+) False G1673231
TU1914368 other downstream 61274 21444883 ~ 21450346 (+) False G1673231

Expression Profile