RNA id: TU1914367


Basic Information

Item Value
RNA id TU1914367
length 5392
RNA type TUCP
GC content 0.53
exon number 3
gene id G1673231
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21444883 ~ 21450346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCaacagttatttattttttgcttccTCTCATCAAGCACCAAAGTATTTTAACAGAAAAGTGGTCAAAGATTCCATTTGAACACTAAACACAGTCTTAATTCCAGTTTCTTTAGGCAGAAAAAAAGCAAAACAAAAGTTGTTCAGTTGCCATGGTTTGTACAGTGATTCAGTATGTATACAAGTGTACATTTCATCAAAATGGCATGATATACTCAAACAGCCCCAAAGAGGGCTATGAATGACCGCAGTGTCattttacatcaccattacatctTCAATACAAAAAAAGTTTAATCTATTAATTCCTGTAGCTTCAAGTTTTATtttcaaaaaataaaattaaataatatctatatataaaatacaagctttccttgttttttttataaaataagtcTCAAGATATATTGCCACTTGTTTTTCCCCCTCCCCCAAATCTCTACCTTTAGAGAAAAATAAGTGAACTTGTGAAATCTTGTGTAATTCTTTAATATGAGGCAAAATGAATTCATTTTCTGACCACAGTAATAAGCCTTCTCACGTTTTGTGCATGTGTTCATGTGAATGTGTTGGTGTTCACAGCAATCAAGATGTTATGTTGCAATATCcccagttaaaaaaaaatatatatacacaaaggCTCATTGGTGCTCATGACCTACACCCCATACTGTACCTTTCAGAAATCAATACTTTTACATAGTTTGGGAGACCAGGTTGCTAGGAAACCAAATCGAGAAAATCAGCAGTAGAAAAAGAGTCTCTGCTCATCATAGGTCTGAAAGTCTGTACAGCGCAAATGTGATTTTCATTTTATTACAAACAGTATTTTATTAAGTCCAGTTTTTGTACAGTAATAACATTAAATTAAACCCAACGTTCAGGGCAAAAGAAGAGGGGCTTGTGACTAGGATgagaggggaagaagaggggcTTGTGACTAGGATGAGAGGGGAAGGGTAGCATCGTTGACAAAAGTTCCTAGGAAAGCCCTTCCCCATATCCCCTTCAAGTTTCAGTTCATGAGGGTATATACACACTACATGGAGCCATCCATCAATCCTCCAAATCAGCTGGCAACATCGGTAGTAAGTTTCTCATCCATCGTCCTGTTTGTAAGTGTAGGGTTAAAGGGGAGTGTAAGACAGGGTTACCCAAACTTTGTCCTGGGCCCCCACCGGGTGCACATTTTGGCTTTTGCCCTAGCACGTCAGTTgcttcaaataatcaaagcttgatgatgagttggttatttgagtcAGCCgtttagtgctagggcaaaaaccaaaacatgcacccggGAGGGGGGAAACCCTGGCGTAGAAGATCTGGGCGTCCAACGACCCGAGATGCTCACAGACAATCCTAGAGGGAGATCAGCCACCCCCTGCTCATCTCCCCAGCAATAATGTTTCGGTTTCACTTGGATCCCTaacaaaatcagaaaaaaaatacACTTGCCCTTCTTTCAACCCTCTCGGTTTTTGGACAGTCATTAACAAAAATATATTCTTCTATTTGAATTGTAGCAGaacatctgccccccccccccccaaaaaaaaagataTGACATTTGTTTGTAGATCCAGCAAAAATAATATTGataattataataaaaaaaacacttctCTGCAAAACAGATACAATCATGACTGGTTTTATGGAGGAAAACCGAACGATAGAAAGGTCCATTGTATTAACTCACCTCAATTGTCCACCACATTTAAAATCTtaaaaatatttgtaaaaaagGCAAAATTCTCAGTCCCcaaaaatattacttgtgtcatataCTAAGGAAGAAATCTCTACTGTCCAGAAACCCCTTACACATTTTGTACACAATTGGcaaaaatatagatatatattaacaGCAATAACTTACCATTTGTTCAATTTATTCATTTATTGACTTGTAGATTTAACGTTGCATCTCCCATAGGAAGTTGAGTTCTTTTCATTTATACATCagaaaaatattaaataaaaataacttcAAAAACTGCCATCCCCCTTCCAGCCAGAACCATGAGGACAGTTCTTCAGAGCACTGAGACGGATGTAGTAGTAGGCTACATAATGTTTAAACTGTTGTGGTTGTTTGTCCCCAGGTCCTGGTGGTTATTACCCAACATGTCTGACTGCCCTGGGCCATGCAAGCCTCCCATCCCACTTATCTGGGACATCATAGCACTCGGGTCTGAACCAAACGTACCCGGGTCCCCAGAGTTagcctgctgctgttgttgctgtgaCAATTGTTGTGGGTTTTGGGGGGCCACCATGCCAGGGTGGTGCTGGGAGAGATGACCCGGGTGCGGAGAGCCTGTCTGTGTCTGGGGGGAGATGCGGTGAGGGGAGGGCTGGGGCTGCATGCGTGGCGAGGGGCTGGAGTGAGGCGGCTGGGACTGTGGCCGAGGGGAGGGCTGAGGGGAACGCACCTGGTTACTGAGGGACTGACCGCCCAGAGCCTGGCCCTGGAGGTGGGGGTGTGGGGACTGGGCCATCTGCTGCTGGGGGCTCATAGGACTGCCGTGCTGGGCAGGCGAGCCCCCTCCTAGGTGCTGCTGCTGGAGTAGTCTCTGGTGGAGGGCCTGCTGGAGCATGGCATGGGAAGACTGGGGCTGACCACCTTGGCCTTGCTGGGGACCCTGCTGCCCCTGTTGGAGCTGCCCAGGCCCCCCACCCCCAtcctgctgttgctgttgttgctgctgctgctgctgctgctgttgcatcTGGTGCTGTAGCCTCTGTTGCAGGGCTGTGGCTACCTGCTGGGACATCGTTCCAGGGTAGCCCTGTCCTTGTTGGCCCTGCCCTGGACCCGGCTGGGGCCCCTGGGGACCTCCCCCACCCTGCTGCGGCCCTCCCCCGCCACCAGGCTGGGTCTGGCCAGGTTGACCAGGCTGGCCCTGATGCATGAAGCCCTGCTGGCCCTGACCCTGCTGCTGTTGTTGGGGGGGCTGGGGCTGCTGGAACTGACCATTGTTACTcatctgttgctgctgctgttggagGTGCCTTCTCATCAGAATCTCTCTGAACTGGGGAGTCATGTTGGACATGGGGGTGCCTTGGCCTGGCATAccgccttgttgttgttgttgtagtgctgcCATTTGCTGCTGTTGCTGCAGACTCCCAGGCAGGAGGGggcgctgctgctgctgttgttgctgctgctgttgctgctgctgctgttgctgctgctgctgctgttgctgctgctgctgctgttgttgctgctgttgttgctgctgctgctgctgttgttgttgttgttgctgctgttgttgttgctgctgctgttgttgttgctgctgctgttgttgttgctgctgctgttgttgctgctgctgtaacTGCTGTAGCTGAGCCATAGTGGACATATTTACTCCTCCGCCTGCCTGGCCCATGTTCATCCCTGGCTGGGCTACTCCGGGGTTTACGTTCACCTGCTGACCATCCATGACCACCTGGTTACCCCCAGGGCCCATTCCTGCCCCACCAGGGGCCCCCTGGAACCGCACGCCTCCGGGCCCCCCTCCTCCCGGGGCCCCCGGCACCCCTGGACCTCCCTGGTATCGGGCAGCTCGCTGCTTGATGAAGGCAGCCATGAGGAGGGGGTTGGAGCGGAGGATATTGAGGACCTGTTGATGCTGGCCGGGGGAGCTGGGGGAACGGAGGGTACGCAGGAGGTCCTGTAGAGCTGCCTGGGGGAGGTTCCCTGTTCCCACCATCGCCGCTGCCGCCCCGGCCACGCCCCCTGGACCTCCCATCAGCCCCATTAACCCCCCTTGCCCTGCCTGCTGTTGCTGCTGACCTTGCTGTTGTTGCTGGACGAGCTgccgctgctgctgttgctgggcgagctgttgttgttgctgcggTGTCAGGTGACCCATCTGTCCCATCATGCCTTGCCTCTGCTGTGGTGCCATCCCACCTGGGCCGCTCCACTGCTGTTGGTTAGGATTCTGGAGTTGGGCTTGCTGCTGGAGCTGAACCTGGGGAGAGAGCTGCGACTGGGGGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCTGCTGCATGCCTCCTTGCCCCACCACCATCCCCTGCTGCTCCATATGAGTCCTCCCTGCCACACCCTGGCCCTGGGGAGCCATCCCCTGGGGCCCTGCAATGCCTGCTCCTGAGTGGGCCATGCCTTGCATCTGGGTCTGGGGGTTCTGGTGGTGGGGGTGAGGGGGCATCATGCCTCCACCCTGGGCCGCCTGCTGCCTTTGGAGGATCTGTGCTTGAGCCTGGGCCATCTGACGCTGTGTCTCTGCCACACGCTGAATCTTCAACGCTATCTCCACCGCTGCCGGAGGAGGCCCCTGCTGCTGCCCCTGGGGCATGGAGCCCTGGCCGGGGTTTGCCTGCTGCTGTGGAGGTGTGGCTGGGCCCAGACCGGGTTTACCCATTGACTGGTGGAGGGGCGAGGCACCTGGAGGTCTGGGGGTGTAAGGGGGAAGACCTCCTGGGTGCTTCATCTGCTGGACATTTGGAGACtggccctgctgctgctgctgttggagctgttgttgGACCATCTGTTGCTGCTGAGGAGAGTTCATCATTACCCCTCCACTATGCTGCATCTGCTGCTGGAACTGGTGGTGCATGTGGTGCTGCTGGGAAATGCCGCCCTGCTGCTGTTGCCCTGGGGGGCCCTGACCCATCCCCTGCTGGGGTCCGAGGGGCATGTTCCCCTGAGTGGGGGTCTGAGGCGTGGGGGGCTGCGTGCCCACGGACATGGGGGTACTGGGCCCTGTAGTGCCGTTGTTTCCCGGGGACGGTAGCCCACCGTTGCCCCCCGGTCCCGGAGGTGGCTGACCCACCCTCTGCATGCTGGCCATCCTCCTCCGCAGCATCTGGGCCTGCTGGAGACGGTGCTGGAGCTGCTGCTGCCTCAGCTTGTGCTTGATGTTCAGACAGAACGGTACAGGACACTTGTTCTCCTGGCAGTGCTTGGCGTGGTAGCAGCACAGGGCGATGAGCTGCTTGCAGATGGGGCAGCCGCCGTTGGTCTTGCGCTTGCAACCTTTGGTGTGCTGCACCACACGCTTCATCTTCTGGCAGGACGGCAGGCTGCAGTTGGCGTTGCGACACTGGCAGGCGTGGACCAGAGACTGGATGCAGCGCTGGATGCTGAGGCGGCGCGAGTCTCCAGGGTTGGCGATGGACGAAGCGGCCGAGTTGTTGCTCTCGTCATCCAGGCCCAGACCCAGCTTCTCCATCTTGTGAATGTGCCCCTTAGAGTTGTAGCAGGTGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914316 lncRNA upstream 21428 21422216 ~ 21423455 (+) False LOC110499100
TU1914315 lncRNA upstream 21912 21422216 ~ 21422971 (+) False LOC110499100
TU1914277 lncRNA upstream 61274 21382739 ~ 21383609 (+) True G1673166
TU1914299 lncRNA upstream 90106 21354563 ~ 21354777 (+) True G1673183
TU1914158 lncRNA upstream 132782 21311742 ~ 21312101 (+) True G1673057
TU1914393 lncRNA downstream 28286 21478632 ~ 21536718 (+) True G1673251
TU1914493 lncRNA downstream 171105 21621451 ~ 21621681 (+) True G1673333
TU1914494 lncRNA downstream 172862 21623208 ~ 21623435 (+) True G1673334
TU1914529 lncRNA downstream 225679 21676025 ~ 21681986 (+) True G1673368
TU1914530 lncRNA downstream 225968 21676314 ~ 21682360 (+) True G1673369
XM_021575996.2 mRNA upstream 2857 21437535 ~ 21442026 (+) True LOC110499099
XM_021575997.2 mRNA upstream 7481 21422168 ~ 21437402 (+) False LOC110499100
XM_021575998.2 mRNA upstream 7481 21422168 ~ 21437402 (+) False LOC110499100
XM_021575999.2 mRNA upstream 7481 21422168 ~ 21437402 (+) False LOC110499100
XM_021576000.2 mRNA upstream 24273 21405523 ~ 21420610 (+) True LOC110499101
LOC118941998 mRNA downstream 46048 21496394 ~ 21517265 (+) True LOC118941998
XR_005037959.1 mRNA downstream 67999 21518345 ~ 21562573 (+) False LOC110499098
XR_005037958.1 mRNA downstream 95646 21545992 ~ 21562573 (+) True LOC110499098
XM_021575992.2 mRNA downstream 122689 21573035 ~ 21586408 (+) False LOC110499096
XM_021575993.2 mRNA downstream 125470 21575816 ~ 21586408 (+) True LOC110499096
TU1914311 other upstream 7502 21423517 ~ 21437381 (+) True LOC110499100
TU1914333 other upstream 55105 21386329 ~ 21389778 (+) True G1673204
TU1914164 other upstream 127471 21316798 ~ 21317412 (+) True G1673063
TU1914145 other upstream 148029 21296372 ~ 21296854 (+) True G1673044
TU1914069 other upstream 253805 21140525 ~ 21191078 (+) True G1672973
TU1914569 other downstream 362899 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 383548 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 486296 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1806458 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 2129684 23580030 ~ 23581387 (+) False faap100

Expression Profile