RNA id: TU1914601


Basic Information

Item Value
RNA id TU1914601
length 377
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1673434
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21804556 ~ 21804932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cataataacagcacttacagttgaacagggcagctctagcaggacagagtCTTGACGAACtgaattgttggaaaggtggcatccaatgacagtgctttgttgaaagtcactaagctttTCACtaagggccattctactgccaatgtctgtCCTTGATGTTATCGTCACAAATAATCcggataggtatcagtctggtgttttctgtaattaccttagtgatcactgttttacagcttgtgttcgtaatggctgctcagtgaaacaacctgtcctgatttgtcatagacgcttgctaaaaaacttgaatgagcaagccttccttcatgacctggcctctgtaaattggtatagaatcagcttgatcccctctgtcgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914502 lncRNA upstream 102752 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 122196 21676314 ~ 21682360 (+) True G1673369
TU1914529 lncRNA upstream 122570 21676025 ~ 21681986 (+) True G1673368
TU1914494 lncRNA upstream 181121 21623208 ~ 21623435 (+) True G1673334
TU1914493 lncRNA upstream 182875 21621451 ~ 21621681 (+) True G1673333
TU1914560 lncRNA downstream 1977 21806909 ~ 21811368 (+) False tnrc6b
TU1914570 lncRNA downstream 8020 21812952 ~ 21813178 (+) False tnrc6b
TU1914563 lncRNA downstream 41024 21845956 ~ 21848439 (+) True tnrc6b
TU1914967 lncRNA downstream 47880 21852812 ~ 21853020 (+) True G1673748
TU1914968 lncRNA downstream 48148 21853080 ~ 21853290 (+) True G1673749
XM_021575982.2 mRNA upstream 48980 21739960 ~ 21755576 (+) True sh3bp1
XM_021575983.2 mRNA upstream 75196 21725548 ~ 21729360 (+) True LOC110499089
XM_021575984.2 mRNA upstream 83000 21710511 ~ 21721556 (+) False cby1
XM_036955972.1 mRNA upstream 83000 21711292 ~ 21721556 (+) False cby1
XM_036955974.1 mRNA upstream 83000 21711326 ~ 21721556 (+) False cby1
XM_036955975.1 mRNA downstream 1771 21806703 ~ 21848442 (+) False tnrc6b
XM_036955976.1 mRNA downstream 1771 21806703 ~ 21848442 (+) False tnrc6b
XM_036955977.1 mRNA downstream 1772 21806704 ~ 21848442 (+) False tnrc6b
XM_036955978.1 mRNA downstream 1773 21806705 ~ 21848442 (+) False tnrc6b
XM_036955979.1 mRNA downstream 1774 21806706 ~ 21848442 (+) False tnrc6b
TU1914366 other upstream 354210 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 354210 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 354210 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 354210 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 367175 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 8313 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 28962 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 131710 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1451872 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1775098 23580030 ~ 23581387 (+) False faap100

Expression Profile