RNA id: TU1914967


Basic Information

Item Value
RNA id TU1914967
length 209
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1673748
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21852812 ~ 21853020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attatgacatgAATACTAGgctacccttattttaccagaaCCTTTTCTCGTTCAGCCTATTTAATACCCTCAAAGCCAGATTAACTCATTGCAGAATGTATCCACAATCATATTTATTTGACAAGAATGCAcctatgtaacagtataaatgttgaccgtcccctcgccgggcgcgaaccagggaccctctgcacacatcaacagtcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914563 lncRNA upstream 4373 21845956 ~ 21848439 (+) True tnrc6b
TU1914570 lncRNA upstream 39634 21812952 ~ 21813178 (+) False tnrc6b
TU1914560 lncRNA upstream 41444 21806909 ~ 21811368 (+) False tnrc6b
TU1914601 lncRNA upstream 47880 21804556 ~ 21804932 (+) True G1673434
TU1914502 lncRNA upstream 151008 21701071 ~ 21701804 (+) True G1673341
TU1914968 lncRNA downstream 60 21853080 ~ 21853290 (+) True G1673749
TU1914970 lncRNA downstream 664 21853684 ~ 21853930 (+) True G1673751
TU1914978 lncRNA downstream 6916 21859936 ~ 21860156 (+) True G1673759
TU1914984 lncRNA downstream 10567 21863587 ~ 21863816 (+) True G1673765
TU1914985 lncRNA downstream 11463 21864483 ~ 21864682 (+) True G1673766
XM_036955975.1 mRNA upstream 4370 21806703 ~ 21848442 (+) False tnrc6b
XM_036955976.1 mRNA upstream 4370 21806703 ~ 21848442 (+) False tnrc6b
XM_036955977.1 mRNA upstream 4370 21806704 ~ 21848442 (+) False tnrc6b
XM_036955978.1 mRNA upstream 4370 21806705 ~ 21848442 (+) False tnrc6b
XM_036955979.1 mRNA upstream 4370 21806706 ~ 21848442 (+) False tnrc6b
XM_036955980.1 mRNA downstream 14814 21867834 ~ 21876459 (+) True LOC110499080
XM_021575967.2 mRNA downstream 23855 21876875 ~ 21894557 (+) False tmem184ba
XM_021575964.2 mRNA downstream 23894 21876914 ~ 21894557 (+) False tmem184ba
XM_021575965.2 mRNA downstream 23894 21876914 ~ 21894557 (+) False tmem184ba
XM_021575966.2 mRNA downstream 23894 21876914 ~ 21894557 (+) False tmem184ba
TU1914567 other upstream 6946 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 38986 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 402466 21444883 ~ 21450346 (+) False G1673231
TU1915004 other downstream 83622 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1403784 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1727010 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1727117 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1727117 23580137 ~ 23581432 (+) False faap100

Expression Profile