RNA id: TU1915002


Basic Information

Item Value
RNA id TU1915002
length 3373
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1673775
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21896765 ~ 21900182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTTGTTTTGCGGTATAACAAAACATCCAGCACAATTTGACAATAATCTTAGatgagacattagatattactgagGATAAATGCTATGCGACATTGATATTGAGCAGATAGCTAAATATATCTTACAGAAGTAATCAACACAATGTCACTATTGACAATTTAAATCATATTGCTATTACTTTCCGAACATTAAGTCAACCCCAGTCTAATAAGAGTCAGCAGGGGTTTATTGATAAATCATGGATGTTACAAGGTTTTCAATTGAATTAAGCACCACCTCATAtcggtcctcttctccttcctcatTCACCTCCCAAATCCTCTTCTACCACCACATCTTTCCTTCATATCCTGTTATCCCTTTCTTTTTCATCTCTGCCTCATTCTTTTATTCCTTTATCATTCTTTTCCTTCGTTCTTTCTCCTTACAGTGTTACTCTCCCTCTCGAGCCATTTCAGAAAACAAACGTGAAATAAAATGTATCATAAATAACAATACGTATCATCACCTTGGTACTTGATAGAAAAATAATATCCCTACAACAAGCCACTCGACTCACTATGAAATTAGTACAAATATGGTGTACACGCATACTAAAATCATCTTACAGCAACATGACCATCGGCTTTTAGCATATCTAAACAGCTCATTACGACAGTTAAACATTACACAAATAATCGTCACACACCCAGTACAACAATTAGACGTGAGAATTTCCCCAAACTAGTCATACGCAGGTATTTGAAACATACATTACACCACAGCACTCATTAGCTTTTGTAATATCTATtctttaaatacaaataaaatagaaTACCTCTGAATAAATGTTCGCTCAAACATTTGTCTCTTGTATAAACATTACAAAATAATATAAAGGAATGTATCAATAGATTTTTGCATTGACATAGTATTCTACGAGATGTGGATTTTTCAACTGTTTCCAGCAATGACCAACTACAACCAAAGCCGTTTATAACAAACCAAAATGTGCACTGTGCAGTTGAAATACACCCATGTAGCCACTACAAACGGCAACACAGTGAAGCACAATAGTATCGACACACAAGAGTACAGATGAACAACACTCCAAGACATGTACAGATGTCAATTGTGATGCCGTTTAAAACGCAAAGCTTGCATTGGAAGAAGCTGCGGAAGAGTCTGATTAACCCAGACATTGTGTAGCGGGGCTAGATGCCATGCTAGAAGGCAGAGCGCTAGCCGGCTCAGCCTGTTGAGTAGCAGTATCAGAGAGCACCAGCAGCAAGACTGGCTTTGTCGAGGGGTGTTGTCTATGTCCCTGTTTTGCACGCCTGTCGTGCCTCAGCCGGACTCGTCAGCAGTCATGTTTCCTCAACTGCACATCTGTATGAGTCTGTATGTGTGATGGCTGGGTTTAGAGTGAGTATTTGTCACTGACTGAACaccttacctgtgtgtgtgtgtttgtgacagggtttccgttagccggtAATAGCCGGCTTTTGGCCGATAACTAAAATTGCCGCCGGCCTATTGTCCTGGAGAAGAAGGAAAATTGCATTGTGAAAATGCATTTTAGCCTATTTATTGATTGAAATACCAGTCGATGTAGCGCAAGAGCTGCTTCTACAGCTCATCAAACAGCTTGTTTGTTGCTGCTGGAGTGAAACGTGCTACTATAAGCCCAATCACTGCACAACAATTCTATATGCAATCTTGTGTTAAAAACAGTTTTGATGGTCACGATTAAAAAGagctactatttttatttatcaACTGTTAATTGAAGCGCACTTCCCATTCGCCATTCAAGTGCATAGGCAACTAGGCAGGCTTCAGCGTGTcaacacaccactttgcaatgagcaGGAGGCAGGTAtgtattttgaaaacatatacttaattgtttgaaaccggAACATTTAactacatattatgaggcatgtcttaccttgcttcaaagtagcctagccaaaatccAACCAAACGTGCAGGCAATTATTTTCTAACGGCTTCCATATTCTATTGAAACCAGTAGCCTATTTCTCATGTTCTACTGGTTTTCAGATCAACcttctttcattgtccagtagccgaaaggcacaatcctagtcatataagcagcccatgctagttgttgcaccTTTAGAGGTCCACTCTTTCTAAATTTCTAACAGATATTTTCAACTCTGTCTCATGAAACCGCTCGCATGTGTGGTGTGCTTTTGACAACTATTTTTTCCTAACAATTGTATTATGGAACGAATATTCGCACATAGCCTACTGCCTTGTGTGGAATTTctgtgcttataatgtgaagaaatttGTTTATGAACATTTTAAGTTAAACTTTCAGATCTGTTGCATGAGCCTCATTGCTTTAAAAATTGGGATGTAAACTAGGCCTACTGGTTatatgaatttgggatctatcgtcccACAACTGTTCCAGTCTGTTTGGAATAGACTATGTTcattactcatcttgttggctgaggaaaagtaaatgtggacagttattctaacatcttcaaattGCGCATTGGAATTCGGTAAGAAGTATTCACATGGTTGCACCCTCGAGTTCCATGTCCCGTTAAGAAGAATAACCATAATCGAAATGTGatttgtcattctgagcaccgtgggtggacgcacTAATCAGGTTACACACCCAATACATATGAGTCCGGTAAACATCTTAAATGTCCGGTAAATTAAAACACTGCCGTTCAAAGGTCTGGCGTcacattttcctaacggaaaccctggtgtgCGAGTGTATGTGTATCATCCTAAGCGCGTGAGTTTCATAAGTGCCTATTTGTCTGTGTTCCTCCAATCCTCCTGCGCTCTCcatgtgtctgcctgtgtgtgtgtgtgtgtgtctgtctatatgAGAGTATGTACGTGCATGAGTCCCTCCCCAGCCCGATCGGTTCCTCCTAGGAGCCCCCCTGCTCTCTTTGGACGTGGGCCTGTGGCGGGGTCTTCACTATGGTAATGACAGAGGCTGTGTTCAGTCGTGGGGCCGTAGCCAGGATGTTACCTCCTCCAGACTCTAACCCACGGGCGAACCTCTGCAGGGCAGCCAGCCTGGCCCCCAGGCCCTCCAGCTCTCTCCTCATCCCAGCGTTCTCCACACCcagcctctccacctccctctggaGCTCCTTTTTCTGCTGCTCCAGGGCCTCACGCTGGGACACGCGCTTCACCCGGCAGCTGGCCGCGTAGCCACGGTTCTTCAGGGTGCGCCGGCGCTGCTTGAGCTTCTGGACCTCCTCGCGGGATAGACCCCGTAGGTGGAGGTTGAGCTCCCGTACAGACAAGGACATGAGCTCGCTGTCCGACAACACCGGAACATTCTCACCACACTCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914987 lncRNA upstream 30715 21865886 ~ 21866095 (+) True G1673768
TU1914985 lncRNA upstream 32128 21864483 ~ 21864682 (+) True G1673766
TU1914984 lncRNA upstream 32994 21863587 ~ 21863816 (+) True G1673765
TU1914978 lncRNA upstream 36654 21859936 ~ 21860156 (+) True G1673759
TU1914970 lncRNA upstream 42880 21853684 ~ 21853930 (+) True G1673751
TU1915005 lncRNA downstream 1685 21901867 ~ 21902080 (+) True G1673778
TU1915024 lncRNA downstream 43846 21944028 ~ 21950021 (+) True G1673797
TU1915025 lncRNA downstream 49065 21949247 ~ 21955161 (+) True G1673798
TU1915030 lncRNA downstream 65752 21965934 ~ 21966202 (+) True G1673803
TU1915010 lncRNA downstream 68455 21968637 ~ 21971293 (+) True G1673783
XM_021575967.2 mRNA upstream 2253 21876875 ~ 21894557 (+) False tmem184ba
XM_021575975.2 mRNA downstream 2423 21902605 ~ 21907221 (+) True tomm22
XM_021575970.2 mRNA downstream 7435 21907617 ~ 21919609 (+) False dmc1
XM_021575971.2 mRNA downstream 7435 21907617 ~ 21919609 (+) True dmc1
XM_021575976.2 mRNA downstream 24643 21924825 ~ 21936465 (+) True gspt1
XR_005037961.1 mRNA downstream 36408 21936590 ~ 21945117 (+) False LOC110513322
TU1914567 other upstream 50944 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 82984 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 446464 21444883 ~ 21450346 (+) False G1673231
TU1915004 other downstream 36460 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1356622 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1679848 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1679955 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1679955 23580137 ~ 23581432 (+) False faap100

Expression Profile