RNA id: TCONS_00050251


Basic Information

Item Value
RNA id TCONS_00050251
length 1043
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_025486
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32546499 ~ 32565883 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATATATTTGAGAAGAGGGACTATGGGTCACAGTTCTTTTACTCTGAAAGCTACAAAAACTACACTGAGCACTGGCATGTTTGGATTCAAATCAGGACCCCGATGTGGATGTCAGCAGTGTGGAGGGTGAAACTCAGTGACCGCGGGCCTTCATAGAGCAGTCTAACATTAACAAAGCAGGAGAgcagagagaaggagagagggaTGAACAGAAAGTGATAGAGACACTGAGCAAGTGTGGAGCACTTTTACAATTCATTCATCTAAGCAGGATTGGAGTGGTCTGGATGCTAGAAAGAGAGGGCAAGGGTTTTCTCACAGGTGACATTTGATGTATGACAATCTGACCATGCTGAACCTACAAAACAGCTCCAACTGGTCCGGCCCTAACAACTGGTACCACCCAGCCGACACCATCACCCCTCAACACGGCACAGATGGTTGTGTGGAGGATCTGAATGTGCAGATGGCCGGAGCAGGGGAAGGAGTGGTGCAGGGAGAGAGGGATGAGGTGGACGATTCGCAGCTACACCTGCAGCTCAAGAGGAAGCTGCAGAGAAACCGCACCAGCTTCACCCAGGAGCAGATCGATGCCCTCGAGAAAGAGTTTGAAAGGACTCATTACCCAGATGTCTTTGCTAGAGAAAGACTGGCTGCAAAGATTGATCTTCCAGAGGCTAGAATTCAGGTATGGTTCTCCAATCGGAGAGCTAAGTGGAGAAGGGAGGAAAAGCTGAGAAACCAGAGGAGATCAGGGAGCAGCAGTTCCTGTTCTCAGACACATACTCCCCTGAGCACGTCCTTTAACTCCCCTGTATATCACTCCCATCACAGCAACAGCTCAGGCTCAATGCACAGTCGGAGTGATTCTTCTCTCTCAGGCTACAGCTCTCTGTCTGTCTTCTCCAGTATGCAGTCTTTGCCCTCCCAGTCCACTCCAACTTACTCCTGCATGTTGCCTCCCTCTCCTTCTGCTCTTCCTCCTCTGTCCCGAAAATTTGACTCATCTTACACCTCTCCCCACCTTCCACCCCCACCTAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in brain; eye; head; retina; and testis.

Ensembl:

ensembl_id ENSDART00000151739

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052721 lncRNA upstream 10121 32532912 ~ 32536378 (+) False XLOC_025485
TCONS_00050250 lncRNA upstream 10121 32534613 ~ 32536378 (+) True XLOC_025485
TCONS_00050249 lncRNA upstream 10804 32532912 ~ 32535695 (+) False XLOC_025485
TCONS_00050240 lncRNA upstream 69214 32474661 ~ 32477285 (+) True XLOC_025481
TCONS_00050237 lncRNA upstream 122268 32420320 ~ 32424231 (+) True XLOC_025479
TCONS_00052722 lncRNA downstream 86797 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050261 lncRNA downstream 86797 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050263 lncRNA downstream 86817 32651717 ~ 32655879 (+) True XLOC_025492
TCONS_00052723 lncRNA downstream 96866 32661766 ~ 32663743 (+) False XLOC_025493
TCONS_00052724 lncRNA downstream 106290 32671190 ~ 32675311 (+) False XLOC_025494
TCONS_00050247 mRNA upstream 10121 32532645 ~ 32536378 (+) False XLOC_025485
TCONS_00050245 mRNA upstream 10337 32532000 ~ 32536162 (+) False XLOC_025485
TCONS_00050248 mRNA upstream 12159 32532662 ~ 32534340 (+) False XLOC_025485
TCONS_00050243 mRNA upstream 15495 32526263 ~ 32531004 (+) False XLOC_025484
TCONS_00050244 mRNA upstream 19074 32526799 ~ 32527425 (+) True XLOC_025484
TCONS_00050255 mRNA downstream 7029 32571929 ~ 32583374 (+) False XLOC_025488
TCONS_00050256 mRNA downstream 13094 32577994 ~ 32583182 (+) True XLOC_025488
TCONS_00050257 mRNA downstream 29457 32594357 ~ 32619634 (+) False XLOC_025489
TCONS_00050258 mRNA downstream 50989 32615889 ~ 32619446 (+) True XLOC_025489
TCONS_00050259 mRNA downstream 55675 32620575 ~ 32629489 (+) True XLOC_025490
TCONS_00050246 other upstream 11373 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 757862 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050187 other upstream 942795 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 1851627 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 2297463 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050254 other downstream 6409 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 97091 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 106290 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050288 other downstream 277894 32842794 ~ 32848026 (+) False XLOC_025502
TCONS_00050297 other downstream 480983 33045883 ~ 33048390 (+) True XLOC_025508

Expression Profile

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