RNA id: TU1915531


Basic Information

Item Value
RNA id TU1915531
length 220
lncRNA type intronic
GC content 0.66
exon number 1
gene id G1674254
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22300189 ~ 22300408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcgtggaaCCCCGACGAGCAGGCTGAGGCATGAAGTGGGATGGgagcctgatgagccggctgaggcggGGAGCCCGACGAGCTGGCTGAGGCATGACGTTTGATGGGAGCCTGCCGAGCCAACCGAGGCAAGGAAACATCTCGAGCCAGCTAAGGCGTGGAAGCCCGCTGAGGCACCCCTGGTTCCCCTGGAAGCGGGCACCCAGACCCGACATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915465 lncRNA upstream 46458 22253333 ~ 22253731 (+) True G1674190
TU1915310 lncRNA upstream 93204 22200118 ~ 22206985 (+) False G1674044
TU1915311 lncRNA upstream 93204 22200118 ~ 22206985 (+) True G1674044
TU1915334 lncRNA upstream 103785 22196197 ~ 22196404 (+) True G1674065
TU1915333 lncRNA upstream 104835 22194979 ~ 22195354 (+) True G1674064
TU1915536 lncRNA downstream 3612 22304020 ~ 22304231 (+) True G1674259
TU1915538 lncRNA downstream 4819 22305227 ~ 22305489 (+) True G1674261
TU1915540 lncRNA downstream 5311 22305719 ~ 22305964 (+) True G1674263
TU1915573 lncRNA downstream 26957 22327365 ~ 22327568 (+) True G1674292
TU1915604 lncRNA downstream 88058 22388466 ~ 22391636 (+) False G1674319
XM_036955992.1 mRNA upstream 18346 22260747 ~ 22281843 (+) False LOC118942051
XM_036955985.1 mRNA upstream 18346 22279997 ~ 22281843 (+) False LOC118942051
XM_036955986.1 mRNA upstream 18346 22279997 ~ 22281843 (+) False LOC118942051
XM_036955987.1 mRNA upstream 18346 22279997 ~ 22281843 (+) False LOC118942051
XM_036955988.1 mRNA upstream 18350 22279997 ~ 22281839 (+) False LOC118942051
XM_021576114.2 mRNA downstream 40321 22340729 ~ 22347757 (+) True ercc4
XM_021576115.2 mRNA downstream 47509 22347917 ~ 22388445 (+) True mrtfba
XM_036955995.1 mRNA downstream 160832 22461240 ~ 22465079 (+) False foxj1b
NM_001160522.2 mRNA downstream 261041 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 271319 22571727 ~ 22572592 (+) True LOC110499167
TU1915004 other upstream 340562 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 454323 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 486363 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 849843 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 956396 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1279622 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1279729 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1279729 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1279729 23580137 ~ 23581387 (+) True faap100

Expression Profile