RNA id: TU1915606


Basic Information

Item Value
RNA id TU1915606
length 2423
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1674319
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22388466 ~ 22391636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTCTACCTGGCATATCATGTCAAACGACTTTAGTAGTACTCAGCATCTCAATCCAAATATTATTCTGATCAATATTGTATAGAACTAATACGGTTGTACTGTATAGCACTTTGGAATATCATGGCTTTATTTTGATGTTTGAACAATCATTCTTATCCAACAAGTCAAACACTAAGGATAACATATAGGCAGGTAATAATGCCAAATACTGTCCACACTGTCTGTTACCATTAGGAACCAGATGCTTGTAACTGTGGTTTAGGGCTATCAaggaattatttgtttttcaattgTTGCCTAATAAGGCAGTGAAACATTGGTGAAAATCTATTGTTGCcacttttttaaaattgtatttatcacattTTTGTGTTCTGAAATCCAATAGTTTTTTCTGTATATATGCAAGAGGAAGAttactgtaaatgttttttttttaccacccATACCAGAAATATATGGCCAAAAGCATCTATATACATGGGTATGCTGTAAAATATGACGGTTGGATTCTAAAACATTTAGATTCTGAATCATGTCAAACCTGTGTACTACTACTGTTAATAGGATGTTAGTGAAGCAATAAGGCCATAGCCTTACACTTACAGCACTGGTTCATTTGTGTTGTCGCTATCTCATAACAAGATGTCATCGTGTTGATCATTGCAAGCGGATCTTGATTTCGGCCTTACCTAATTCTGTGTCTTCTGTATGGTACTTGTCTCCCGTTCAACCCTGGTTCTTTGTCTGAAatgtaactacactgaacaaaagtgTAAAcgcaacattttcaaagattttagttcatataaggaaatccgtcaattgaaatacattcactaGGCCCtactctatggatttcacatgactgggaataagaTGTGTATCTGTTggccacagataccttaaaaaaggtaggggtgtggatcagaaaaccagtcagtatctggtgtgaccaccatttgcctcaggcagcatgacacatctccttcacatagagttgatcaggctgttgattggggcatgttgtcccactcctctggatattggtgggaactggaacatgctgtcatacacatcGATCCATAGCATCCCAaaaatgctcaatgggtgacctgtctgagtatgcaggtcatgtaggaactgggacattttcagtttccagaaattgtgtacagatctttcTGACAGGGGCTGTgtattttcatgctgaaacatgaggtgatggtggcacgACAATGAGCCGCaggatctctgtgcattcaaattgcaatcaataaaatgcaattgtgttcgttgtccatagcttatgcctgcccataccttaaccccaccaccaccatggggtactctgttcacaacgttgacatcagaaaacctcTAACTCACACATCGGCCATgtacccggtacagttgaaaccttGATTCAACCATGATTAGCACCAGTGGGAATCGAGGGTGCGCCTTTGCCCACTGCAGTCTTTTACGACgcccaaactgcagtcaggtcaagactctGAGCACACTGATGAGCTTTCCTGAGACGATTTATGACCTTAAGGTCAGAAATTATTCGGTTGTTCAGACCCGCAATTTCTTCAGCTGTCcggttggctggtctcagacggttacgcaggtgaagaagcggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggacgtggaggtcctgggctggcgtggttacacctggtctgtgcttgtgaggccggttgccaaattctctaaaacgacgtttaggccgcttatggtagagaaattaacgttCCATTCTCTGACAACCGCCctggtggacattccagcagtccgcatgccaattgcacgctccctcaaaacttgactgCAAATTTCagagtggacttttattgtccccagcacaagatgcaccttagtaatgatcatgctgtttaaccagcttcttgatatgccacacctgtcaggtggatggagtattttggcaaaggagaaatgctcagtaacacaacatttgagagagatAAGCTTttggtgtgtatggaacatttctgcaatcttttatttcagctcatgaaacatgggaccaacattttatatgttgtgttttatatttttgttcagtgtagtaagacatttgccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915573 lncRNA upstream 60898 22327365 ~ 22327568 (+) True G1674292
TU1915540 lncRNA upstream 82502 22305719 ~ 22305964 (+) True G1674263
TU1915538 lncRNA upstream 82977 22305227 ~ 22305489 (+) True G1674261
TU1915536 lncRNA upstream 84235 22304020 ~ 22304231 (+) True G1674259
TU1915531 lncRNA upstream 88058 22300189 ~ 22300408 (+) True G1674254
TU1915622 lncRNA downstream 5384 22397020 ~ 22397239 (+) True G1674331
TU1915624 lncRNA downstream 8692 22400328 ~ 22400573 (+) True G1674333
TU1915630 lncRNA downstream 14304 22405940 ~ 22406284 (+) True G1674339
TU1915634 lncRNA downstream 18353 22409989 ~ 22410212 (+) True G1674343
TU1915611 lncRNA downstream 23278 22414914 ~ 22416760 (+) False G1674321
XM_021576115.2 mRNA upstream 21 22347917 ~ 22388445 (+) True mrtfba
XM_021576114.2 mRNA upstream 40709 22340729 ~ 22347757 (+) True ercc4
XM_036955991.1 mRNA upstream 106628 22280000 ~ 22281838 (+) False LOC118942051
XM_036955995.1 mRNA downstream 69604 22461240 ~ 22465079 (+) False foxj1b
NM_001160522.2 mRNA downstream 169813 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 180091 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 182906 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 191180 22582816 ~ 22583667 (+) True LOC118942010
TU1915004 other upstream 428839 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 542600 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 574640 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 938120 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 865168 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1188394 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1188501 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1188501 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1188501 23580137 ~ 23581387 (+) True faap100

Expression Profile