RNA id: TU1915680


Basic Information

Item Value
RNA id TU1915680
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1674387
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22478002 ~ 22478209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctaagtgacgccAAACATTTGAACGGCAGTGTATGTCAGATACTTTCAAATATGCATGATGAAGGTAACTGAGGTGCTATTGGAGTTTGCTATTTTtgaactattccattggttccattgcactGGGCAGAACTAACCAAGCACAGCTCAAGTATCTGAAAGTATTTTTACGTTATGCATTTCACCCAGGTTTGGTAGATATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915679 lncRNA upstream 151 22477635 ~ 22477851 (+) True G1674386
TU1915674 lncRNA upstream 13164 22464308 ~ 22464838 (+) True foxj1b
TU1915610 lncRNA upstream 59108 22416062 ~ 22418894 (+) True G1674321
TU1915611 lncRNA upstream 61242 22414914 ~ 22416760 (+) False G1674321
TU1915608 lncRNA upstream 61242 22416062 ~ 22416760 (+) False G1674321
TU1915683 lncRNA downstream 3203 22481412 ~ 22481707 (+) True G1674390
TU1915686 lncRNA downstream 6849 22485058 ~ 22485285 (+) True G1674393
TU1915694 lncRNA downstream 12589 22490798 ~ 22492131 (+) True G1674398
TU1915701 lncRNA downstream 18256 22496465 ~ 22496791 (+) True G1674404
TU1915709 lncRNA downstream 25914 22504123 ~ 22505126 (+) True G1674409
XM_036955995.1 mRNA upstream 12923 22461240 ~ 22465079 (+) False foxj1b
XM_021576115.2 mRNA upstream 89557 22347917 ~ 22388445 (+) True mrtfba
XM_021576114.2 mRNA upstream 130245 22340729 ~ 22347757 (+) True ercc4
XM_036955989.1 mRNA upstream 196165 22280001 ~ 22281837 (+) False LOC118942051
NM_001160522.2 mRNA downstream 83240 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 93518 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 96333 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 104607 22582816 ~ 22583667 (+) True LOC118942010
XM_021576722.2 mRNA downstream 112894 22591103 ~ 22591954 (+) True LOC110499593
TU1915004 other upstream 518375 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 632136 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 664176 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1027656 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 778595 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1101821 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1101928 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1101928 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1101928 23580137 ~ 23581387 (+) True faap100

Expression Profile