RNA id: TU1915694


Basic Information

Item Value
RNA id TU1915694
length 1309
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1674398
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22490798 ~ 22492131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACACTCACCACCACTTAGACAGCAGTACACATGTTAACCTACAAGTGTTTTGTCTAGTGTAATATAGGGCACAcatgacacactattccctatatagttcactgtACAGAGCAGTGGTTACCCAAGGGGGGGGTGAGGGGTCggcagccccccccccaaacaaaaaaCACTTGTAATTTGTAATAGTTGAATGCAAAAGGTGCATTTTCGatattgggtagtgcatcattagtttctcttgtcatgtcagtcattgcatacaTTAGAGAGCTATTTCTAACCTATTTATAACTAAcccatgtcagctaatgttttttagcccatagattttgttgtaattttttagttactcaaatatcacatgaatacacattaggcTCTGCAAAATGTctataattgcaggaaataagcgtTTACAACTCtctgccaacaagaggggtgtgaacacttgGTGTCATGAACAATGCTTGTGCCATTGTGAGAtgagtgaaaaagtttgggaacctctggtatagagaatagtgtgccatttgagactTGGACCTAGATATGGCAGTAATAACCAAGGCACCAGAGGCAGTCATCGTACAGTACTACAGGAATCCCTTTTCTTTCCTGTGAGATAGTTCCCTGTCTGAGGTCATCCAATAAACCAATACAACTTTTCGTCAGCTTTATGACGTGTGtagaaaaatacaaaacaaaatcccTCCACAGCTGTATGTGGTCTGACGGCCACAAGGTGGTGCTGTTGTGTCTGTTTTTAATAAGAGCAGCGGCAAGGCAACAGTCACATTTAACCCCCCCTTCTGTCTTTAAGTCTTTATGCTTTGAAAGTGACAGGTCACTCGCTAGCAATGTCCATATAAACAAAATCAAATGGAGACAGATCAACAGTTATTAAGATCAACAGTTATTTTTCCAAGATTGGCAATCTTCACATCCAATGTCCTGAATACTACAACAAATATGGCCGCCGGTCTGGTCCATGCCGTGACGTTGCTTAGAGTCTTGTTCACCAGCCGACCCTTTTGTCCTGCTATCCTGGCGCGTGAGGCTATAGTTCTTTGAGATTGTCCATTCTAGTCATTGCAATTGTACAGTCAAAGGCCTGGTCAGTGGAGGTGGGCGTTGAGGTCGTACTTGTCACAGAACTTGTCAGTGAGGGGAATACAGGTGAGGTACTCACACCACTCACACTTGACCGGGTGTATGTAGAACAGTACAGCCAGTCCTGAGAAGAGACCCAGGAACACCAACAGGAACACACAGATCTGGACACGCTTACGGTACATGTCCGAACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915686 lncRNA upstream 5513 22485058 ~ 22485285 (+) True G1674393
TU1915683 lncRNA upstream 9091 22481412 ~ 22481707 (+) True G1674390
TU1915680 lncRNA upstream 12589 22478002 ~ 22478209 (+) True G1674387
TU1915679 lncRNA upstream 12947 22477635 ~ 22477851 (+) True G1674386
TU1915674 lncRNA upstream 25960 22464308 ~ 22464838 (+) True foxj1b
TU1915701 lncRNA downstream 4334 22496465 ~ 22496791 (+) True G1674404
TU1915709 lncRNA downstream 11992 22504123 ~ 22505126 (+) True G1674409
TU1915734 lncRNA downstream 48791 22540922 ~ 22541149 (+) True G1674434
TU1915741 lncRNA downstream 58370 22550501 ~ 22550771 (+) True G1674441
TU1915748 lncRNA downstream 64853 22556984 ~ 22557210 (+) True G1674446
XM_036955995.1 mRNA upstream 25719 22461240 ~ 22465079 (+) False foxj1b
XM_021576115.2 mRNA upstream 102353 22347917 ~ 22388445 (+) True mrtfba
XM_021576114.2 mRNA upstream 143041 22340729 ~ 22347757 (+) True ercc4
XM_036955989.1 mRNA upstream 208961 22280001 ~ 22281837 (+) False LOC118942051
NM_001160522.2 mRNA downstream 69318 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 79596 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 82411 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 90685 22582816 ~ 22583667 (+) True LOC118942010
XM_021576722.2 mRNA downstream 98972 22591103 ~ 22591954 (+) True LOC110499593
TU1915004 other upstream 531171 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 644932 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 676972 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1040452 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 764673 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1087899 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1088006 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1088006 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1088006 23580137 ~ 23581387 (+) True faap100

Expression Profile