RNA id: TU1915873



Basic Information


Item Value
RNA id TU1915873
length 200
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1674558
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22539839 ~ 22540038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtatatactgtattgtattctatactacaccactgactgtgaaacagccatctccagcacatcagaggctgctgcctatagacatacagttgaagtcggaagtttacataaaccttagccaaatacatttaaactcagtttttgattattcctgacatttaatcctagtaaaaaatccctgttttaggtcagttagtatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1915869 lncRNA downstream 5342 22533350 ~ 22534497 (-) True G1674554
TU1915853 lncRNA downstream 51124 22488427 ~ 22488715 (-) True G1674539
TU1915852 lncRNA downstream 51787 22487641 ~ 22488052 (-) True G1674538
TU1915848 lncRNA downstream 55852 22483589 ~ 22483987 (-) True G1674534
TU1915840 lncRNA downstream 67121 22472462 ~ 22472718 (-) True G1674528
TU1915884 lncRNA upstream 21355 22561393 ~ 22562892 (-) True G1674564
TU1915889 lncRNA upstream 24257 22564295 ~ 22568906 (-) True G1674565
TU1915881 lncRNA upstream 31740 22571778 ~ 22572594 (-) True G1674563
TU1916131 lncRNA upstream 141079 22681117 ~ 22681850 (-) False G1674762
TU1916135 lncRNA upstream 143058 22683096 ~ 22683665 (-) True G1674762
XM_036955998.1 mRNA downstream 2137 22490738 ~ 22537702 (-) True rhbdf1b
XM_036955996.1 mRNA downstream 2143 22490738 ~ 22537696 (-) False rhbdf1b
XM_036955999.1 mRNA downstream 2148 22490738 ~ 22537691 (-) False rhbdf1b
XM_036955997.1 mRNA downstream 14651 22490738 ~ 22525188 (-) False rhbdf1b
XM_036956000.1 mRNA downstream 24027 22490738 ~ 22515812 (-) False rhbdf1b
XM_021576122.2 mRNA upstream 63558 22603596 ~ 22607933 (-) True aqp8a.2
XM_021576121.2 mRNA upstream 68673 22608711 ~ 22615064 (-) True aqp8a.1
XM_036956010.1 mRNA upstream 89489 22629527 ~ 22636406 (-) False lcmt1
XM_036956009.1 mRNA upstream 89489 22629527 ~ 22639623 (-) False lcmt1
XM_036956011.1 mRNA upstream 89489 22629527 ~ 22639689 (-) False lcmt1
TU1915789 other downstream 142616 22396909 ~ 22397223 (-) True G1674481
TU1915783 other downstream 145277 22391817 ~ 22394562 (-) True LOC110499164
TU1915780 other downstream 151361 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other downstream 151361 22386323 ~ 22388478 (-) False LOC118942052
TU1915580 other downstream 208033 22331350 ~ 22331806 (-) True G1674299
TU1915929 other upstream 51532 22591570 ~ 22601548 (-) True G1674592
TU1916236 other upstream 295785 22835823 ~ 22837881 (-) True msrb1b
TU1917320 other upstream 317075 22857113 ~ 22864346 (-) False G1675801
TU1917519 other upstream 654927 23194965 ~ 23204089 (-) True LOC118942011
TU1917593 other upstream 789859 23329897 ~ 23332080 (-) True G1676051

Expression Profile