RNA id: TU1915741


Basic Information

Item Value
RNA id TU1915741
length 271
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1674441
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22550501 ~ 22550771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctcactctctcactcattctctttctctctctctgtatagacACCTTaactgaggaaagagagggacagtgagATAGAacgccagacagagagagagagagagagagagagagagagagagagagagagagagagagagggagagcaaattTAACCGTGTAATAGCTTTTATAAGGCATGCAGGCCTTTCCCCTCCCTTTTAATTGTTTTGTAGCCTGTGTGAGCCCTAAACTACGTGCAGGAAATTCAGAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915734 lncRNA upstream 9352 22540922 ~ 22541149 (+) True G1674434
TU1915709 lncRNA upstream 45375 22504123 ~ 22505126 (+) True G1674409
TU1915701 lncRNA upstream 53710 22496465 ~ 22496791 (+) True G1674404
TU1915694 lncRNA upstream 58370 22490798 ~ 22492131 (+) True G1674398
TU1915686 lncRNA upstream 65216 22485058 ~ 22485285 (+) True G1674393
TU1915748 lncRNA downstream 6213 22556984 ~ 22557210 (+) True G1674446
TU1915975 lncRNA downstream 85886 22636657 ~ 22636891 (+) True G1674616
TU1915977 lncRNA downstream 88783 22639554 ~ 22639924 (+) True G1674618
TU1915965 lncRNA downstream 137355 22688126 ~ 22691716 (+) False arhgap17a
TU1915967 lncRNA downstream 137355 22688126 ~ 22691716 (+) False arhgap17a
XM_036955995.1 mRNA upstream 85422 22461240 ~ 22465079 (+) False foxj1b
XM_021576115.2 mRNA upstream 162056 22347917 ~ 22388445 (+) True mrtfba
XM_021576114.2 mRNA upstream 202744 22340729 ~ 22347757 (+) True ercc4
XM_036955989.1 mRNA upstream 268664 22280001 ~ 22281837 (+) False LOC118942051
NM_001160522.2 mRNA downstream 10678 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 20956 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 23771 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 32045 22582816 ~ 22583667 (+) True LOC118942010
XM_021576722.2 mRNA downstream 40332 22591103 ~ 22591954 (+) True LOC110499593
TU1915004 other upstream 590874 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 704635 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 736675 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1100155 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 706033 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1029259 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1029366 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1029366 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1029366 23580137 ~ 23581387 (+) True faap100

Expression Profile