RNA id: TU1916300


Basic Information

Item Value
RNA id TU1916300
length 2083
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1674902
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22950386 ~ 22952493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCAAACAAAACTCCACAGAAACAATGAACAGATGAAAAATAAGCATTTTAGCTGCAGTCAGAACCACAGCCTCTAATGGTGTCCATACCTCCGTCTATACATAAAGTATCAACACAGACAGACGTATGGAAACAcgtatactgtatatagcttctgaCCAGGAAATAATATTTCCCATAAATACCCTTTCAGTCATGATCCCAAACATTCAAGTATTTCTATCATTGCACAGGCACTAGGtttatctactgtatatatatgaaCTTTCAGTAACAGTAACTGAAATGTTTTCTCCAGCAAAGCAGATCTGCAGTTGGAAAGTTAAGAAATGTACATCCTGCATATCTGTAGACAACATTAACATCTGGACATCATACATACAATCACACCCTAAAGGAATATTCATCCTACAAAAATCTTGGTGTCACATTTGGCTTCTTAGTACCAAAATTGAGGACTGACTAAAGTTTCATCTTAAATTCATCCTCAAATAATAAATGAATCTATGGGCCAAAGAAAAATAAGAGGAAAGTACAATGGAGGATATGCTGTAGTGTGAATCACTTTGAATCGGATTCATTCTTGTCATTCAAACccgaaagggcctttcccaaactgttgcccctaaattggaagcacagaatcgtctaggatgtcattgtatgctgtagcgttaagattccccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagttaGCACTATCCATTGGGGcaagtagcattctcctggcatctgccaaacctagATTCgtcagtcggactgccagatggtgaagcctgccactttgtggctgagcctttgttgctcctagacttttccacttcacaataacagcacttacaattgaccgggacaaactgacttgttggaaaggtggcatcttatgacggtgcaacattgaaagtcactgagctccagtaaggccattctactgtcaatgtttgtctatggagattgcatggcggtgtgctcgattttatacacctgtcagcaatgggtgtggctgaaatagatgaacacactaatttgaaggggtgtccacatatatatatatatatatacacacacacaaaagtatctGCGGAGCGAGCGGGTTTGAGGGTCATcctattgtgtggatgaaggagGGGTGGGTGGCGAGCGGGTTGAATAATGAGGAAACAATGCATACAAAGATCCATAAATGTATCATTCTTGTTGAACGTATATCTACcggctacattgaggtttttccTTCATTCTTTTTAGGCTATCTGGCATTAGTGCCACCAAATAGCCTACAAGCCAATagccaaatgcttttgggaacggACAGAAAAAGTTAAAGTCGATCCACTGAGGCAAAAAGGATAATGTCGGAGTTTAATTGAATAAAATAAAAGCTGCGAAATGGAGAGTTGTTTAAGTGGTAAAGGAGTGTGCCGgctatgttatgtgtgatgattctttacattttatttaacctttatttaactaggcaagtcagtaaagaacaccccagctgacgctgggccaattgtgcgttgcccaatcacggctggttgtgatacagcctggaatcaaacaaGGGTCTGTAGTCACGCctctaccactgagatgcagtgcgttagaccgctgtgccactcgggaggccactcAAGGCGTGCATACAAATTCAACAGTCACAAGACCAGGACAAGTCAAtttaactgtagcctactgttcagatgggttaaatggaaactgaaatctggacactgactgtaggtctataaccttaCACATACccttaatattaactcctgcagaatgatgcatttcttgcagtaaaataatACACCAAATTCAAATGTATCCTACATTTTGACTCGGAAACAGGGGTGGAGAAATATGATTGATTTCTTAGAGCATCTTGAGAGAATCCGAATCTGCAGTTAGGGACCTTCTGTAGAGGTGCTAtttttatcagcatcataaaagctaaTAGGCCtagtatttcaaccacaggaggttggtggcacctaaaTTGCCATTCACACTGTTAGCATACAcccttctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916268 lncRNA upstream 9680 22939309 ~ 22940706 (+) True G1674881
TU1916229 lncRNA upstream 118046 22832119 ~ 22832340 (+) True G1674848
TU1916221 lncRNA upstream 121590 22828567 ~ 22828796 (+) True G1674840
TU1915985 lncRNA upstream 184954 22749085 ~ 22765432 (+) True G1674625
TU1916025 lncRNA upstream 244117 22705560 ~ 22706269 (+) True G1674664
TU1916313 lncRNA downstream 16647 22969140 ~ 22969575 (+) True G1674912
TU1916342 lncRNA downstream 49092 23001585 ~ 23005692 (+) True G1674940
TU1916349 lncRNA downstream 57251 23009744 ~ 23010909 (+) True G1674946
TU1916354 lncRNA downstream 63707 23016200 ~ 23016747 (+) True G1674951
TU1916424 lncRNA downstream 162668 23115161 ~ 23117436 (+) True G1675016
XM_021576142.2 mRNA upstream 11471 22918884 ~ 22938915 (+) False LOC110499185
XM_021576143.2 mRNA upstream 11471 22918884 ~ 22938915 (+) True LOC110499185
XM_021576144.2 mRNA upstream 17620 22918884 ~ 22932766 (+) False LOC110499185
XM_021576145.2 mRNA upstream 17620 22918884 ~ 22932766 (+) False LOC110499185
XM_021576147.2 mRNA upstream 33741 22914145 ~ 22916645 (+) True LOC110499186
XM_021576153.2 mRNA downstream 251270 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576154.2 mRNA downstream 251270 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576156.2 mRNA downstream 251270 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576157.2 mRNA downstream 251270 23203763 ~ 23252161 (+) True baiap2l1a
XM_036956022.1 mRNA downstream 300307 23252800 ~ 23269058 (+) False LOC110499192
TU1915004 other upstream 990759 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1104520 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1136560 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1500040 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 304311 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 627537 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 627644 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 627644 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 627644 23580137 ~ 23581387 (+) True faap100

Expression Profile