RNA id: TCONS_00052722


Basic Information

Item Value
RNA id TCONS_00052722
length 588
lncRNA type sense_over
GC content 0.46
exon number 8
gene id XLOC_025492
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32651697 ~ 32658436 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCATATTTACGCGACGCCATTTGAATGAGTAGCACACGAAAGGGCTTTGTGTAAAAAGTAGCTGAGGATTTTTAAGTTACATTAAGCGTTTAATAATCTCCCGAAGATGGGTCCAGTTGAGCTCCTGCACATGTCAGTCTTCTCTCAGAGCTTCTCTCCCTGCGGTCGCTACCTCGCAGCGGGCAACAACTATGGAGAGATTGCAGTGTTCAGTCTTTCAGCTGCACTGAGCCCAGATGCATCAGAAAGGAGTCAGAAGCCCATCCTTAACTTTACCGcTCACGACGGTCCTGTATTCTCTCTTCTGTCCACTGAATCTCATCTCCTGAGCGCTGGGAATGGAGAGATCAGTGCCTGGAGTTGGGCAGAGCTCATCAAAAAAAGCACCAAAGCTGCATGGACAAGAAAACCTAATTATGAGACTAGTCTTGAAATTCCAGAAATCAATGCGATGATCATTAACCCAAAGGACAACAACTTGATAGTTGGAGGAGGAGACAATAACATTCACATCATGGACATGGAGACTGGTACCTTCAAATCTGTACTGAAGGGCCACACTGACTACATCCACTGCCTGTCCTTC

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0006325 chromatin organization biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006996 organelle organization biological_process
GO:0006999 nuclear pore organization biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0000793 condensed chromosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052721 lncRNA upstream 115319 32532912 ~ 32536378 (+) False XLOC_025485
TCONS_00050250 lncRNA upstream 115319 32534613 ~ 32536378 (+) True XLOC_025485
TCONS_00050249 lncRNA upstream 116002 32532912 ~ 32535695 (+) False XLOC_025485
TCONS_00050240 lncRNA upstream 174412 32474661 ~ 32477285 (+) True XLOC_025481
TCONS_00050237 lncRNA upstream 227466 32420320 ~ 32424231 (+) True XLOC_025479
TCONS_00052723 lncRNA downstream 4633 32661766 ~ 32663743 (+) False XLOC_025493
TCONS_00052724 lncRNA downstream 14057 32671190 ~ 32675311 (+) False XLOC_025494
TCONS_00050269 lncRNA downstream 14435 32671568 ~ 32675311 (+) True XLOC_025494
TCONS_00050272 lncRNA downstream 28853 32685986 ~ 32686666 (+) True XLOC_025495
TCONS_00050276 lncRNA downstream 50007 32707140 ~ 32708110 (+) True XLOC_025497
TCONS_00050260 mRNA upstream 1419 32631372 ~ 32650278 (+) True XLOC_025491
TCONS_00050259 mRNA upstream 22208 32620575 ~ 32629489 (+) True XLOC_025490
TCONS_00050257 mRNA upstream 32063 32594357 ~ 32619634 (+) False XLOC_025489
TCONS_00050258 mRNA upstream 32251 32615889 ~ 32619446 (+) True XLOC_025489
TCONS_00050255 mRNA upstream 68323 32571929 ~ 32583374 (+) False XLOC_025488
TCONS_00050264 mRNA downstream 4632 32661765 ~ 32669219 (+) False XLOC_025493
TCONS_00050266 mRNA downstream 6732 32663865 ~ 32666951 (+) True XLOC_025493
TCONS_00050267 mRNA downstream 14013 32671146 ~ 32680126 (+) False XLOC_025494
TCONS_00050270 mRNA downstream 24141 32681274 ~ 32688592 (+) False XLOC_025495
TCONS_00050271 mRNA downstream 24176 32681309 ~ 32689328 (+) False XLOC_025495
TCONS_00050254 other upstream 80326 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050246 other upstream 116571 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 863060 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050187 other upstream 1047993 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 1956825 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050265 other downstream 4858 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050268 other downstream 14057 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050288 other downstream 185661 32842794 ~ 32848026 (+) False XLOC_025502
TCONS_00050297 other downstream 388750 33045883 ~ 33048390 (+) True XLOC_025508
TCONS_00050301 other downstream 688214 33345347 ~ 33363031 (+) False XLOC_025512

Expression Profile

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