RNA id: TU1916610


Basic Information

Item Value
RNA id TU1916610
length 227
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1675191
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23421386 ~ 23421612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttccacactatgcacttggaataatactgtgaaattatgataatgctctgtttgaaaagactgcctgaaatttcagcctgtttttgtGTGATGTAGTTTTTACCTGCCTAGTGACATAACctggtggtaaattagttaacagACCAATAAGAGTTCTAAAccgctctgccaataacagctagttttcagtttcccctaCGCACtaagaccactcccagacagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916608 lncRNA upstream 3000 23418135 ~ 23418386 (+) True G1675189
TU1916539 lncRNA upstream 162889 23258199 ~ 23258497 (+) True LOC110499192
TU1916424 lncRNA upstream 303950 23115161 ~ 23117436 (+) True G1675016
TU1916354 lncRNA upstream 404639 23016200 ~ 23016747 (+) True G1674951
TU1916349 lncRNA upstream 410477 23009744 ~ 23010909 (+) True G1674946
TU1916614 lncRNA downstream 15733 23437345 ~ 23443412 (+) True G1675195
TU1916630 lncRNA downstream 37720 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA downstream 37720 23459332 ~ 23461445 (+) False G1675209
TU1916634 lncRNA downstream 37720 23459332 ~ 23465663 (+) True G1675209
TU1916712 lncRNA downstream 158525 23580137 ~ 23582539 (+) False faap100
XM_036956032.1 mRNA upstream 25675 23369126 ~ 23395711 (+) True LOC118936387
XM_036955546.1 mRNA upstream 45090 23367993 ~ 23376296 (+) True eif2ak1
XM_036956026.1 mRNA upstream 70829 23333421 ~ 23350557 (+) False dlgap5
XM_036956027.1 mRNA upstream 70829 23333421 ~ 23350557 (+) True dlgap5
XM_036956025.1 mRNA upstream 89275 23316877 ~ 23332111 (+) True ccz1
XM_036955530.1 mRNA downstream 71984 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA downstream 72053 23493665 ~ 23501495 (+) True rac1
XM_021576199.2 mRNA downstream 88020 23509632 ~ 23518623 (+) True LOC110499211
XM_021576211.2 mRNA downstream 113304 23534916 ~ 23544723 (+) False LOC110499219
XM_021576212.2 mRNA downstream 113304 23534916 ~ 23544723 (+) True LOC110499219
TU1916535 other upstream 163317 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1461759 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1575520 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1607560 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 1971040 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 158418 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 158525 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 158525 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 158525 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1661052 25082664 ~ 25083277 (+) True G1677419

Expression Profile