RNA id: TU1916634


Basic Information

Item Value
RNA id TU1916634
length 1352
lncRNA type intronic
GC content 0.34
exon number 6
gene id G1675209
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23459332 ~ 23465663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaacattccaacagagcacttagtaaaaaccccattccaacagagcacttagtaaaaaacccattccaacagagcacttaataATAAacccattccaacagagcacttagtaaaaaaaacattccaacagagcaATTAATAATAaccccattccaacagagcacttaataaaaaaaacattccaacagagcacttagtaataaccccattccaacagagcacttaataaaaaaaacattccaacagagcactttgTAAAAAtaacattccaacagagcacttaataaaaaaaacattccaacagagcactttgtaaaaaaacattccaacagagcacttaataaaaaaaatattccaacagagcactttgtaaaaaaacattccaacagagcacttaataaaaaacacattccaacagagcacttaataaaaaaaacattccaacagagcacttaataaaaacccattccaacagagcacttaacaaaaaaataattccaacagagcacttagtaataaccccattccaacagagcacttaataAAAAacccattccaacagagcacttagtaaaaaacccattccaacagagcacttagtaaaaaaaacattccaacagagcacttagtagaaaccccattccaacagagcacttagtaataaccccattccaacagagcacttagtaaaAACCCCATTCCAACAGACCACTTAGTAAAAAAAAcattccaacagagcacttagtaaaaaaaacattccaacagagcacttagtagaaaccccattccaacagagcacttagtaataaccccattccaacagagcacttagtaaaAACCCCATTCCAACAGACCACTTAGTAAAAAAcccattccaacagagcacttagtaataaccccattccaacagagcacttagtaaaaaaaacattccaacagagcacttagtaataaccacattccaaccgagcacttagtaaaaaaaaacattccaacagagcacttagtaataaccccattccaacagagcacttcgttaaaaaaaacattccaacagagcacttaataaaaaaaacattccaacagagcacttcataaaaaaaaacattccaacagagcacttggTAAAAaccccattccaacagagcacttaataaaaaaaacattccaacagagcacttaataaaaacccattccaacagagcacttcataaaaaaaacattccaacagagcacttaataaaaaaacattccaacagagcacttaataaaaaaaacattccaacagagcacttcgttaaaaaaaacattcaaacagAACActtagtaaaaaaaaacattccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916614 lncRNA upstream 15920 23437345 ~ 23443412 (+) True G1675195
TU1916610 lncRNA upstream 37720 23421386 ~ 23421612 (+) True G1675191
TU1916608 lncRNA upstream 40946 23418135 ~ 23418386 (+) True G1675189
TU1916539 lncRNA upstream 200835 23258199 ~ 23258497 (+) True LOC110499192
TU1916424 lncRNA upstream 341896 23115161 ~ 23117436 (+) True G1675016
TU1916712 lncRNA downstream 114474 23580137 ~ 23582539 (+) False faap100
TU1916797 lncRNA downstream 217795 23683458 ~ 23683683 (+) True G1675345
TU1916798 lncRNA downstream 218067 23683730 ~ 23683992 (+) True G1675346
TU1916799 lncRNA downstream 219443 23685106 ~ 23685337 (+) True G1675347
TU1916800 lncRNA downstream 219991 23685654 ~ 23685859 (+) True G1675348
XM_036956028.1 mRNA upstream 29149 23396037 ~ 23430183 (+) False LOC110499199
XM_021576173.2 mRNA upstream 29149 23396038 ~ 23430183 (+) True LOC110499199
XM_036956032.1 mRNA upstream 63621 23369126 ~ 23395711 (+) True LOC118936387
XM_036955546.1 mRNA upstream 83036 23367993 ~ 23376296 (+) True eif2ak1
XM_036956027.1 mRNA upstream 108775 23333421 ~ 23350557 (+) True dlgap5
XM_036955530.1 mRNA downstream 27933 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA downstream 28002 23493665 ~ 23501495 (+) True rac1
XM_021576199.2 mRNA downstream 43969 23509632 ~ 23518623 (+) True LOC110499211
XM_021576211.2 mRNA downstream 69253 23534916 ~ 23544723 (+) False LOC110499219
XM_021576212.2 mRNA downstream 69253 23534916 ~ 23544723 (+) True LOC110499219
TU1916535 other upstream 201263 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1499705 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1613466 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1645506 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 2008986 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 114367 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 114474 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 114474 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 114474 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1617001 25082664 ~ 25083277 (+) True G1677419

Expression Profile