RNA id: TCONS_00052723


Basic Information

Item Value
RNA id TCONS_00052723
length 926
lncRNA type sense_over
GC content 0.46
exon number 2
gene id XLOC_025493
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32661765 ~ 32669219 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTGCTTCTGGCTGGAATGTCATCAGTTAGTCTGTGGCAACAGAATAGCGATGGTAATCTCAGCAGCAACAGGAGTGGCATGAGGAGGAGGAGTAGACTGAGAAACTCGGGCACatgatgaggatgaggatgagAGTGACTCGACATTCAGGTGCGGCGGCCTCGAATGGGCGGATCTGATCTCTGCGGCCGCTGGGACACTGACCGAACTTCCCCTAACACTGGACTTCCCGGATCCCGGTTCTGCTTGCGAGACTGACTCGACAAAGTACCCGTCAAACTTGCCAAAAACTTCAGCAAAGTCTTCCGGATTTGCCTTCGGCGTGTTAGGAATACGTGGTTTAAAGTGTTTTCGgaTTTTGGTTTCAGGGAGACCGAAAGGTACTTGCCTCACTTCCGGCTTGAATCTGCATTCCTGCAGTGTCTTGGAATACCTGTGTTCTTTCAAAGGGAGGGAAGCTACCAGCCCCTGCATGCATGCATCGGTTTAATAGGCGGAATGGGATTGTTGTGACAAGATGCCATCTTCATATCTGGATGATCGAGATTTGGAGACCAAACATCTTGGATCTCATACAAACTGCCCTGTTTTCCGTGTGAACTGGTTCCTGACATACTCAAAACCTGTTATTATGAGCCCCGTCAACGATTTAAAGAAACACTCGTTTTGAGATCTGAGTAATTTGAGACTTAACCACAACAAAGTGGTAATGTGTTTGCACTTGCGGGTGAGGCGGCAAAGAGTAAATTTCACTTAGATTTTAACTGTGAGCACTAATAAGAAATGGGAAAAGAACTGGAGATGTAAAGTCTGTTTTAAGATAAACGTGGAAAATTGCACTGATTCATGAGTGGAAATGCACTGAAATCAAACTGGTGAATCATTTAACGCTTGAGCTCGAATGAAAAACTGGATACACAAGT

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052722 lncRNA upstream 4633 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050261 lncRNA upstream 4633 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050263 lncRNA upstream 5887 32651717 ~ 32655879 (+) True XLOC_025492
TCONS_00052721 lncRNA upstream 125388 32532912 ~ 32536378 (+) False XLOC_025485
TCONS_00050250 lncRNA upstream 125388 32534613 ~ 32536378 (+) True XLOC_025485
TCONS_00052724 lncRNA downstream 7447 32671190 ~ 32675311 (+) False XLOC_025494
TCONS_00050269 lncRNA downstream 7825 32671568 ~ 32675311 (+) True XLOC_025494
TCONS_00050272 lncRNA downstream 22243 32685986 ~ 32686666 (+) True XLOC_025495
TCONS_00050276 lncRNA downstream 43397 32707140 ~ 32708110 (+) True XLOC_025497
TCONS_00050281 lncRNA downstream 85943 32749686 ~ 32772217 (+) True XLOC_025499
TCONS_00050262 mRNA upstream 3330 32651697 ~ 32658436 (+) False XLOC_025492
TCONS_00050260 mRNA upstream 11488 32631372 ~ 32650278 (+) True XLOC_025491
TCONS_00050259 mRNA upstream 32277 32620575 ~ 32629489 (+) True XLOC_025490
TCONS_00050257 mRNA upstream 42132 32594357 ~ 32619634 (+) False XLOC_025489
TCONS_00050258 mRNA upstream 42320 32615889 ~ 32619446 (+) True XLOC_025489
TCONS_00050266 mRNA downstream 122 32663865 ~ 32666951 (+) True XLOC_025493
TCONS_00050267 mRNA downstream 7403 32671146 ~ 32680126 (+) False XLOC_025494
TCONS_00050270 mRNA downstream 17531 32681274 ~ 32688592 (+) False XLOC_025495
TCONS_00050271 mRNA downstream 17566 32681309 ~ 32689328 (+) False XLOC_025495
TCONS_00050273 mRNA downstream 25964 32689707 ~ 32696592 (+) False XLOC_025496
TCONS_00050254 other upstream 90395 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050246 other upstream 126640 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 873129 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050187 other upstream 1058062 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050170 other upstream 1966894 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050268 other downstream 7447 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050288 other downstream 179051 32842794 ~ 32848026 (+) False XLOC_025502
TCONS_00050297 other downstream 382140 33045883 ~ 33048390 (+) True XLOC_025508
TCONS_00050301 other downstream 681604 33345347 ~ 33363031 (+) False XLOC_025512
TCONS_00050303 other downstream 681727 33345470 ~ 33378643 (+) False XLOC_025512

Expression Profile

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