RNA id: TU1918192


Basic Information

Item Value
RNA id TU1918192
length 280
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1676610
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24404944 ~ 24405223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGTTGGTAAAAGCTGGACAGTCACTGGGTGTGGTTCTGCAGGGacaaatgtccttgagtggcccagccggagcCCAGACTTGACCCACATCAAaaatctctggagacctgaaaatagctgtacagcgacgctccctatacaacctgacagagcttgaggatctgcagagaagaatgggagaaactccccaaatgcaggtgtgccaaacttgtagtgtcatatccaagaagtcttgaggctgtaatcgctgccaaaggtgcttcaacaaagtacttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918191 lncRNA upstream 133 24404452 ~ 24404811 (+) True G1676609
TU1917163 lncRNA upstream 163214 24241367 ~ 24241730 (+) True G1675662
TU1917082 lncRNA upstream 218456 24180359 ~ 24186488 (+) True G1675585
TU1917083 lncRNA upstream 225526 24178949 ~ 24179418 (+) True G1675586
TU1916986 lncRNA upstream 314378 24028387 ~ 24090566 (+) True LOC110499226
TU1918194 lncRNA downstream 2267 24407490 ~ 24409559 (+) False G1676611
TU1918197 lncRNA downstream 2267 24407490 ~ 24409559 (+) True G1676611
TU1918228 lncRNA downstream 23516 24428739 ~ 24429172 (+) True G1676642
TU1918325 lncRNA downstream 106810 24512033 ~ 24512237 (+) True G1676736
TU1918327 lncRNA downstream 107808 24513031 ~ 24513335 (+) True G1676738
XR_005037973.1 mRNA upstream 215485 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 235452 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 235452 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 235452 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 376063 24021330 ~ 24028881 (+) False LOC110499226
XR_002469986.2 mRNA downstream 224320 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 487707 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 487707 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 487707 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 487707 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 823512 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 823557 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 823557 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 823557 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1146875 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 677441 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1231468 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2056971 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2226912 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2249404 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile