RNA id: TU1918197


Basic Information

Item Value
RNA id TU1918197
length 418
lncRNA type antisense_over
GC content 0.46
exon number 5
gene id G1676611
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24407490 ~ 24409559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCTTTTTATTACAATTCACTGTACACAAAGATGGTCCTCTACTTGAGCTCCTTCACAGCCAGACCtgGGGGGCAGGGACTGCTTCAGCTTCTCGGCCTTCTCCTTGTCCGTGATGACGAGGGTGTACAGGTACCTGCTGCAACGCACCTTGAACTTGACATTTTCCTTGTTCTTCTTGATCTTTACGGACTTGGCATCCTTCCTTCTTGCTGTAAGCAGGAAATCTTTTATTTCTTCAATTTTGCGTGGCATCTTGCCGTGTTTGCGGACTGAAGCACAGCCTACAAGAGAGGGGATGAAGAGGGTGGAACTTCCGCTGACGCAATCTTTATAGTCAAGTTACGGCGACTCATGGAGGACAAATGTAACACGGACTACTTTCTCCAAAGAGTATGGATATACTGATATGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918192 lncRNA upstream 2267 24404944 ~ 24405223 (+) True G1676610
TU1918191 lncRNA upstream 2679 24404452 ~ 24404811 (+) True G1676609
TU1917163 lncRNA upstream 165760 24241367 ~ 24241730 (+) True G1675662
TU1917082 lncRNA upstream 221002 24180359 ~ 24186488 (+) True G1675585
TU1917083 lncRNA upstream 228072 24178949 ~ 24179418 (+) True G1675586
TU1918228 lncRNA downstream 19180 24428739 ~ 24429172 (+) True G1676642
TU1918325 lncRNA downstream 102474 24512033 ~ 24512237 (+) True G1676736
TU1918327 lncRNA downstream 103472 24513031 ~ 24513335 (+) True G1676738
TU1918343 lncRNA downstream 114190 24523749 ~ 24524213 (+) True G1676754
TU1918348 lncRNA downstream 117507 24527066 ~ 24527287 (+) True G1676759
XR_005037973.1 mRNA upstream 218031 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 237998 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 237998 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 237998 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 378609 24021330 ~ 24028881 (+) False LOC110499226
XR_002469986.2 mRNA downstream 219984 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 483371 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 483371 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 483371 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 483371 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 826058 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 826103 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 826103 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 826103 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1149421 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 673105 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1227132 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2052635 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2222576 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2245068 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile