RNA id: TU1918327


Basic Information

Item Value
RNA id TU1918327
length 305
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1676738
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24513031 ~ 24513335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatggtcagatgccgagcagttgccataccaggtggcgATGCAACccgtgctctcgatggtgcagctgtagaaagtTTTGTGGATCTGGGgagccatgccaaatcttttcagtctcctgagggggaaaaagtgTGCTCTCTtaacaactgtcttggtgtgtttggaccatgatagttcgttggtgatgtgtacgccaaagaacttgaaactctcgacccgctccacttcagccccgtcgattttaatgggggcctgttcgaccCTCCTTTTCccatagtccacgatcagctcctttgtcttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918325 lncRNA upstream 794 24512033 ~ 24512237 (+) True G1676736
TU1918228 lncRNA upstream 83859 24428739 ~ 24429172 (+) True G1676642
TU1918194 lncRNA upstream 103472 24407490 ~ 24409559 (+) False G1676611
TU1918197 lncRNA upstream 103472 24407490 ~ 24409559 (+) True G1676611
TU1918192 lncRNA upstream 107808 24404944 ~ 24405223 (+) True G1676610
TU1918343 lncRNA downstream 10414 24523749 ~ 24524213 (+) True G1676754
TU1918348 lncRNA downstream 13731 24527066 ~ 24527287 (+) True G1676759
TU1918370 lncRNA downstream 28338 24541673 ~ 24541932 (+) True G1676781
TU1918378 lncRNA downstream 32793 24546128 ~ 24546344 (+) True G1676789
TU1918401 lncRNA downstream 46988 24560323 ~ 24560540 (+) True G1676812
XR_005037973.1 mRNA upstream 323572 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 343539 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 343539 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 343539 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 484150 24021330 ~ 24028881 (+) False LOC110499226
XR_002469986.2 mRNA downstream 116208 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 379595 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 379595 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 379595 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 379595 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 931599 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 931644 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 931644 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 931644 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1254962 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 569329 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1123356 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1948859 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2118800 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2141292 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile