RNA id: TU1918343


Basic Information

Item Value
RNA id TU1918343
length 465
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1676754
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24523749 ~ 24524213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagcgggacagccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918327 lncRNA upstream 10414 24513031 ~ 24513335 (+) True G1676738
TU1918325 lncRNA upstream 11512 24512033 ~ 24512237 (+) True G1676736
TU1918228 lncRNA upstream 94577 24428739 ~ 24429172 (+) True G1676642
TU1918194 lncRNA upstream 114190 24407490 ~ 24409559 (+) False G1676611
TU1918197 lncRNA upstream 114190 24407490 ~ 24409559 (+) True G1676611
TU1918348 lncRNA downstream 2853 24527066 ~ 24527287 (+) True G1676759
TU1918370 lncRNA downstream 17460 24541673 ~ 24541932 (+) True G1676781
TU1918378 lncRNA downstream 21915 24546128 ~ 24546344 (+) True G1676789
TU1918401 lncRNA downstream 36110 24560323 ~ 24560540 (+) True G1676812
TU1918420 lncRNA downstream 49823 24574036 ~ 24574410 (+) True G1676831
XR_005037973.1 mRNA upstream 334290 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 354257 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 354257 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 354257 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 494868 24021330 ~ 24028881 (+) False LOC110499226
XR_002469986.2 mRNA downstream 105330 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 368717 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 368717 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 368717 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 368717 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 942317 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 942362 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 942362 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 942362 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1265680 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 558451 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1112478 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1937981 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2107922 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2130414 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile