RNA id: TU1918378


Basic Information

Item Value
RNA id TU1918378
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1676789
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24546128 ~ 24546344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgtttactgttgtgctatcatcagataatagcttctcatgctttcgccgaaaagcctttttaaaatctgacatgttggctggattcacaacgagtgtagctttaatttagtatcttacatgtgtgatttaatgaaagtttgatttctatatcattttatttgaatttgccgcactgcattttccctggcttttggccagcgtcccctataccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918370 lncRNA upstream 4196 24541673 ~ 24541932 (+) True G1676781
TU1918348 lncRNA upstream 18841 24527066 ~ 24527287 (+) True G1676759
TU1918343 lncRNA upstream 21915 24523749 ~ 24524213 (+) True G1676754
TU1918327 lncRNA upstream 32793 24513031 ~ 24513335 (+) True G1676738
TU1918325 lncRNA upstream 33891 24512033 ~ 24512237 (+) True G1676736
TU1918401 lncRNA downstream 13979 24560323 ~ 24560540 (+) True G1676812
TU1918420 lncRNA downstream 27692 24574036 ~ 24574410 (+) True G1676831
TU1918470 lncRNA downstream 66718 24613062 ~ 24613686 (+) True G1676878
TU1918590 lncRNA downstream 157439 24703783 ~ 24704010 (+) True G1676993
TU1918600 lncRNA downstream 162548 24708892 ~ 24709115 (+) True G1677003
XR_005037973.1 mRNA upstream 356669 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 376636 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 376636 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 376636 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 517247 24021330 ~ 24028881 (+) False LOC110499226
XR_002469986.2 mRNA downstream 83199 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 346586 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 346586 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 346586 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 346586 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 964696 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 964741 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 964741 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 964741 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1288059 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 536320 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1090347 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1915850 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2085791 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2108283 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile