RNA id: TCONS_00050268


Basic Information

Item Value
RNA id TCONS_00050268
length 203
RNA type processed_transcript
GC content 0.50
exon number 3
gene id XLOC_025494
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32671146 ~ 32680126 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGCCGAGAGCGACGTCCTTTCTGAAATTGAAGTGCTGCAGTCTATCTACTTGGATGAACTCAACGTTACTCAGAACGATGAGGGGGGGTGGACTGTCAGTTTGGTGCTCCATCCCTCCACTGCAGAGGACTGTCTCTCTCAGTTTGTCCGACTGACACTCACAATGGATCTGGACTCTCAGGTTTGTTGGttaaattgct

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-1581 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within positive regulation of canonical Wnt signaling pathway. Predicted to be active in nucleus. Orthologous to human RNF25 (ring finger protein 25).

Ensembl:

ensembl_id ENSDART00000136292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052723 lncRNA upstream 7447 32661766 ~ 32663743 (+) False XLOC_025493
TCONS_00052722 lncRNA upstream 14057 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050261 lncRNA upstream 14057 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050263 lncRNA upstream 15311 32651717 ~ 32655879 (+) True XLOC_025492
TCONS_00052721 lncRNA upstream 134812 32532912 ~ 32536378 (+) False XLOC_025485
TCONS_00050272 lncRNA downstream 14023 32685986 ~ 32686666 (+) True XLOC_025495
TCONS_00050276 lncRNA downstream 35177 32707140 ~ 32708110 (+) True XLOC_025497
TCONS_00050281 lncRNA downstream 77723 32749686 ~ 32772217 (+) True XLOC_025499
TCONS_00052349 lncRNA downstream 127999 32799962 ~ 32805375 (+) True XLOC_025500
TCONS_00052725 lncRNA downstream 304919 32976882 ~ 33029027 (+) False XLOC_025505
TCONS_00050264 mRNA upstream 1971 32661765 ~ 32669219 (+) False XLOC_025493
TCONS_00050266 mRNA upstream 4239 32663865 ~ 32666951 (+) True XLOC_025493
TCONS_00050262 mRNA upstream 12754 32651697 ~ 32658436 (+) False XLOC_025492
TCONS_00050260 mRNA upstream 20912 32631372 ~ 32650278 (+) True XLOC_025491
TCONS_00050259 mRNA upstream 41701 32620575 ~ 32629489 (+) True XLOC_025490
TCONS_00050270 mRNA downstream 9311 32681274 ~ 32688592 (+) False XLOC_025495
TCONS_00050271 mRNA downstream 9346 32681309 ~ 32689328 (+) False XLOC_025495
TCONS_00050273 mRNA downstream 17744 32689707 ~ 32696592 (+) False XLOC_025496
TCONS_00050274 mRNA downstream 19312 32691275 ~ 32695237 (+) True XLOC_025496
TCONS_00050275 mRNA downstream 26461 32698424 ~ 32711280 (+) False XLOC_025497
TCONS_00050265 other upstream 7444 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050254 other upstream 99819 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050246 other upstream 136064 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 882553 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050187 other upstream 1067486 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050288 other downstream 170831 32842794 ~ 32848026 (+) False XLOC_025502
TCONS_00050297 other downstream 373920 33045883 ~ 33048390 (+) True XLOC_025508
TCONS_00050301 other downstream 673384 33345347 ~ 33363031 (+) False XLOC_025512
TCONS_00050303 other downstream 673507 33345470 ~ 33378643 (+) False XLOC_025512
TCONS_00050306 other downstream 735625 33407588 ~ 33407710 (+) True XLOC_025514

Expression Profile

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