RNA id: TU1918634


Basic Information

Item Value
RNA id TU1918634
length 360
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1677037
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24730508 ~ 24730867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTGCACAGATCCTCAATACTAATACCTATGATCGCCCTACACATAAGAAATAAGTGACCTTGCAGTTGTGACGTTTTCTTTCTGGTAAGAATATCCTCAACGTTAAAGAGAGTTTCAAGTGGAATAGTCAACCCAAAGTGCTGAGGAAAGGTCAAAGTAGAAAACAATAACATTACAATCAAAATAGGGGAGCAATGTACGCTCCTGTTATCACCTATACATCCAGTGGCAGTATGATAAATGGTAACCTATCCAGTTCCAATCTACATATAAATACAAAACTGCTGTTAGCTACAGTACCACCGtttctaattctctctctaaaatgtaaaatatcctatcttcagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918600 lncRNA upstream 21393 24708892 ~ 24709115 (+) True G1677003
TU1918590 lncRNA upstream 26498 24703783 ~ 24704010 (+) True G1676993
TU1918470 lncRNA upstream 116822 24613062 ~ 24613686 (+) True G1676878
TU1918420 lncRNA upstream 156098 24574036 ~ 24574410 (+) True G1676831
TU1918401 lncRNA upstream 169968 24560323 ~ 24560540 (+) True G1676812
TU1918689 lncRNA downstream 63509 24794376 ~ 24849004 (+) True G1677090
TU1918831 lncRNA downstream 135056 24865923 ~ 24866134 (+) True G1677229
TU1918835 lncRNA downstream 140104 24870971 ~ 24871197 (+) True G1677233
TU1918911 lncRNA downstream 199051 24929918 ~ 24930381 (+) True G1677303
TU1918982 lncRNA downstream 276021 25006888 ~ 25007244 (+) True G1677367
XR_002469986.2 mRNA upstream 98407 24629543 ~ 24632101 (+) True LOC110499595
XR_005037973.1 mRNA upstream 541049 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 561016 24146065 ~ 24169492 (+) False slc16a3
XM_036956065.1 mRNA downstream 162063 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 162063 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 162063 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 162063 24892930 ~ 25354425 (+) False sdk2b
XM_036956069.1 mRNA downstream 162063 24892930 ~ 25354425 (+) True sdk2b
TU1916710 other upstream 1149076 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 1149121 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 1149121 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 1149121 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1472439 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 351797 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 905824 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1731327 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 1901268 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 1923760 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile