RNA id: TCONS_00050273


Basic Information

Item Value
RNA id TCONS_00050273
length 2694
RNA type mRNA
GC content 0.37
exon number 6
gene id XLOC_025496
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32689707 ~ 32696592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACATTCTCTGCTTAATGAACATTTCTGTGCTTTAGCTCGGTGGTCAGTTCCTCTATTTTAATTATATCGCATTTCTCAATCAAAAACTTGGAAAGATAAGAAGATGTAGCTTTTTAAAGAAACATCATAAATCTGTTATCTTGGCGCAGTCGGTCTTCGGAGGTTTGGGTTCAAATGGTTTTCTAGTGCTTAAAAGTAAACGTAGCTCGCTGACATTTTTATTGTTCGAGTAGACCACGCGTGACCCGGAATATTCTTCTTGAATTATAGGATTTTTTTGACATTACACGTAATTTTTTTTGGACCGAGTTGTTTGCCACAGAGTCGATCGTTTTTGGTTGAACAACCAAGAACAATTAAAAGCTTCTTCTTTTAAACGTGAAGGCGATTATTAACCGATATTCAGCCGACTGAACACAATGACTGATTCTTGCCTACAGCTCTTCTTGATGGCAACAGGATTGTCAACGTGTCTGGCACAAGTGTGCGGCAGGCCTCCGCTAGGGAAACGCATTGTTGGAGGAGTTGAAGCATCACCAGGATCGTGGCCTTGGCAAGTGGATATTCAGATGGGATCCAATGGACATGTTTGTGGTGGATCTATCATTGCTAAAAATTGGGTCCTATCTGCTGCGCACTGCTTTCCTAACCCCTCAGAGGTGTCTGCGTACACTCTGTACATGGGACGTCATCTGCTCAATGGCTATAACCAGTTTGAGAAGGTCAGTTACGTGCAGCGAGTGGTCATTCCTGAAGGATACACAGATCCTCAGGGTGGCAGAGATGTAGCGTTGGTGCAGCTGCGCGCTCCGGTCTCCTGGACAGACAGGATTCAGCCTGTGTGTCTGCCGTTTGCTGACTTCCAGTTCAACAGTGGGACCTTGTGCTACGTGACAGGCTGGGGACACAAACAGGAGGGTGTTTCCCTCACTGGAGCAGCAGCTCTACGGGAAGTAGAAGTGCCTATTATTGACCAATCGTCCTGCCAATTTATGTATCAGATTTTGTCGTCTGATTCATCAACGGTTGACATCCTATCAGACATGATCTGTGCTGGATATAAAGAGGGAGGCAAGGATTCCTGTCAGGGGGACTCCGGAGGGCCTCTGGTTTGTCCTGTTGGCAATGGGACATGGATTCAAGCAGGAGTTGTGAGTTTTGGACTTGGTTGTGCTCAGAAAAACCGACCAGGTATCTATTCCCGAGTGTCAAGCTTTGAAAAGCTCATCCGCACCACAGTTCCAGAAGCTTACTTTTTGGGCCATGCTTGTAGAAGCGAAAGTCAAACGCCTCTGGTTACAGTCCTGTCTTTAGCATTAGTGCTCATTTGGAGATAGTGGATTAGTTAAGCAGATGGAATTTACAAGTGACACAATCAAACTTTTGTTAAATGCCACCGGTTTTGTCCATGTggcattcattattattttttattttctgtttgaatGAAGTCAGTGCAAAGCTTCAGATAATCttgcacattatttttaattatgtggTAATTTGCAATATGTTCTTATGAGGTGATCTagtctaggcatgggacgataatcgttttcaaggtatactgcggtttggaacagtcaaggttttaaaaccgccaaaaattTTTGCAGTACCGTTCCTAAGTTAACTGTAAGTTTTTTTcacatatttgctaatttatttatttttttcttttaacaacAGTATCTCCGGCAGAAAATAAatctaaagatgccattttaaattgtaaatttaaattgtttttgaaaataaagaagacagcagaagtcaatgattaattttaatgatttattctgacatgtttactgctacaaaatatattaaaagtttctcaaaataaaatatattgtgttcaaaggggaaacaagttttatttatttttttacccagacatttaaaaagaatatattttagagtagtATTCACAATACTGTGACaccgtaatatttttatccaaggtaatcatatcgtcagaatcttcTAACGGCCCATGCCTAATCTAGTCATCTGATCATGGCTAAGCACAATCTAGTCCTTGCATTGTTATTGTGTTTGAGTTATTATTACTTAATGTAATTGCAATAATGTCATCAAAACCTCAGAACACTTTATGATGCCAACATCCTACTTCATAGGATAAATTCAGTATGGTTTTTTAtttctgattttgtttgattGTAATGAAATTGTAATGTAATTGATTGACTGAATGAGGCATATTATTGCACACACTCCACTGCTTGCTTTCACTCATGCATTTAATATCAGTGTTGTAACATCTTAGATGATTGTAGAATTTATATTAGATTAGTATGCCATTTGTTTTCTCTGCATGTTTTAATGAAGATGGATTTGATTTATCAGTTCTTTTGTAAGTCaaaatgcatgtatttaaatgtggttataaatgCATTCAATCTCAGTGTTGTAAGCTCTTTTGTAGAATTTTATAGAATATAAAAGCTCTTTTGTagaatttgtattaaaatgacatttcagtttatttgtttccacttgtttttttggtttttttttataaagatgaTTTTGGTTCGATCATTTCTTTAAAAAGCTACATATTTCAATTATGTCTTTAAATAGGTGAGTTAGCCGAATCTATAGTAAACATGTTTGATTACCATTTGCTtttgaaatacaaaaataaaaaagaagaacaaaTCTTAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-262 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including PRSS27 (serine protease 27).

Ensembl:

ensembl_id ENSDART00000029262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050272 lncRNA upstream 3041 32685986 ~ 32686666 (+) True XLOC_025495
TCONS_00052724 lncRNA upstream 14396 32671190 ~ 32675311 (+) False XLOC_025494
TCONS_00050269 lncRNA upstream 14396 32671568 ~ 32675311 (+) True XLOC_025494
TCONS_00052723 lncRNA upstream 25964 32661766 ~ 32663743 (+) False XLOC_025493
TCONS_00050261 lncRNA upstream 32574 32651697 ~ 32657133 (+) False XLOC_025492
TCONS_00050276 lncRNA downstream 10548 32707140 ~ 32708110 (+) True XLOC_025497
TCONS_00050281 lncRNA downstream 53094 32749686 ~ 32772217 (+) True XLOC_025499
TCONS_00052349 lncRNA downstream 103370 32799962 ~ 32805375 (+) True XLOC_025500
TCONS_00052725 lncRNA downstream 280290 32976882 ~ 33029027 (+) False XLOC_025505
TCONS_00052726 lncRNA downstream 309246 33005838 ~ 33029027 (+) True XLOC_025505
TCONS_00050271 mRNA upstream 379 32681309 ~ 32689328 (+) False XLOC_025495
TCONS_00050270 mRNA upstream 1115 32681274 ~ 32688592 (+) False XLOC_025495
TCONS_00050267 mRNA upstream 9581 32671146 ~ 32680126 (+) False XLOC_025494
TCONS_00050264 mRNA upstream 20488 32661765 ~ 32669219 (+) False XLOC_025493
TCONS_00050266 mRNA upstream 22756 32663865 ~ 32666951 (+) True XLOC_025493
TCONS_00050275 mRNA downstream 1832 32698424 ~ 32711280 (+) False XLOC_025497
TCONS_00050277 mRNA downstream 17565 32714157 ~ 32742578 (+) False XLOC_025498
TCONS_00050278 mRNA downstream 18496 32715088 ~ 32740891 (+) True XLOC_025498
TCONS_00050279 mRNA downstream 47354 32743946 ~ 32778243 (+) False XLOC_025499
TCONS_00050280 mRNA downstream 53021 32749613 ~ 32778250 (+) False XLOC_025499
TCONS_00050268 other upstream 17744 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050265 other upstream 25961 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050254 other upstream 118336 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050246 other upstream 154581 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 901070 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050288 other downstream 146202 32842794 ~ 32848026 (+) False XLOC_025502
TCONS_00050297 other downstream 349291 33045883 ~ 33048390 (+) True XLOC_025508
TCONS_00050301 other downstream 648755 33345347 ~ 33363031 (+) False XLOC_025512
TCONS_00050303 other downstream 648878 33345470 ~ 33378643 (+) False XLOC_025512
TCONS_00050306 other downstream 710996 33407588 ~ 33407710 (+) True XLOC_025514

Expression Profile

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