Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050281 |
| length | 1130 |
| lncRNA type | retained_intron |
| GC content | 0.39 |
| exon number | 4 |
| gene id | XLOC_025499 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 32743946 ~ 32778250 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0016853 | isomerase activity | molecular_function |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | molecular_function |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| ko00120 | Primary bile acid biosynthesis |
| id | description |
|---|---|
| ZDB-GENE-030131-5673 | Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Is expressed in several structures, including adenohypophysis; digestive system; lens; macrophage; and solid lens vesicle. Human ortholog(s) of this gene implicated in congenital bile acid synthesis defect 1 and intrahepatic cholestasis. Orthologous to human HSD3B7 (hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7). |
| ensembl_id | ENSDART00000053683 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050276 | lncRNA | upstream | 41576 | 32707140 ~ 32708110 (+) | True | XLOC_025497 |
| TCONS_00050272 | lncRNA | upstream | 63020 | 32685986 ~ 32686666 (+) | True | XLOC_025495 |
| TCONS_00052724 | lncRNA | upstream | 74375 | 32671190 ~ 32675311 (+) | False | XLOC_025494 |
| TCONS_00050269 | lncRNA | upstream | 74375 | 32671568 ~ 32675311 (+) | True | XLOC_025494 |
| TCONS_00052723 | lncRNA | upstream | 85943 | 32661766 ~ 32663743 (+) | False | XLOC_025493 |
| TCONS_00052349 | lncRNA | downstream | 27745 | 32799962 ~ 32805375 (+) | True | XLOC_025500 |
| TCONS_00052725 | lncRNA | downstream | 204665 | 32976882 ~ 33029027 (+) | False | XLOC_025505 |
| TCONS_00052726 | lncRNA | downstream | 233621 | 33005838 ~ 33029027 (+) | True | XLOC_025505 |
| TCONS_00052350 | lncRNA | downstream | 269090 | 33041307 ~ 33043550 (+) | True | XLOC_025506 |
| TCONS_00052351 | lncRNA | downstream | 271427 | 33043644 ~ 33045022 (+) | True | XLOC_025507 |
| TCONS_00050277 | mRNA | upstream | 7108 | 32714157 ~ 32742578 (+) | False | XLOC_025498 |
| TCONS_00050278 | mRNA | upstream | 8795 | 32715088 ~ 32740891 (+) | True | XLOC_025498 |
| TCONS_00050275 | mRNA | upstream | 38406 | 32698424 ~ 32711280 (+) | False | XLOC_025497 |
| TCONS_00050273 | mRNA | upstream | 53094 | 32689707 ~ 32696592 (+) | False | XLOC_025496 |
| TCONS_00050274 | mRNA | upstream | 54449 | 32691275 ~ 32695237 (+) | True | XLOC_025496 |
| TCONS_00050282 | mRNA | downstream | 17388 | 32789605 ~ 32811362 (+) | False | XLOC_025500 |
| TCONS_00050283 | mRNA | downstream | 19569 | 32791786 ~ 32805826 (+) | False | XLOC_025500 |
| TCONS_00050284 | mRNA | downstream | 59825 | 32832042 ~ 32835628 (+) | False | XLOC_025501 |
| TCONS_00050285 | mRNA | downstream | 59825 | 32832042 ~ 32842383 (+) | False | XLOC_025501 |
| TCONS_00050286 | mRNA | downstream | 60321 | 32832538 ~ 32837627 (+) | False | XLOC_025501 |
| TCONS_00050268 | other | upstream | 77723 | 32671190 ~ 32671963 (+) | False | XLOC_025494 |
| TCONS_00050265 | other | upstream | 85940 | 32661991 ~ 32663746 (+) | False | XLOC_025493 |
| TCONS_00050254 | other | upstream | 178315 | 32571309 ~ 32571371 (+) | True | XLOC_025487 |
| TCONS_00050246 | other | upstream | 214560 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
| TCONS_00050194 | other | upstream | 961049 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050288 | other | downstream | 70577 | 32842794 ~ 32848026 (+) | False | XLOC_025502 |
| TCONS_00050297 | other | downstream | 273666 | 33045883 ~ 33048390 (+) | True | XLOC_025508 |
| TCONS_00050301 | other | downstream | 573130 | 33345347 ~ 33363031 (+) | False | XLOC_025512 |
| TCONS_00050303 | other | downstream | 573253 | 33345470 ~ 33378643 (+) | False | XLOC_025512 |
| TCONS_00050306 | other | downstream | 635371 | 33407588 ~ 33407710 (+) | True | XLOC_025514 |
