RNA id: TU1921649



Basic Information


Item Value
RNA id TU1921649
length 238
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1679832
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27046323 ~ 27046560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaggaaagacagctgtgaaaacaacagctggaaaatgagtcggaagcacagtagcatttggatgcattttaataatgtagacaatgttagagcacagtgtagaatttgccaaaacaaaatctcatataaAGCCGGTTCTACGCCCTACCTACACTGGCATATGCGAACTGTGCACCCAACTATGAAGCTAGCTGTAGCGGGGCTTTGAGAAACTAgcgggcctgctagtgatagtggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1921646 lncRNA upstream 1624 27044292 ~ 27044699 (+) True G1679829
TU1921617 lncRNA upstream 6965 27039119 ~ 27039358 (+) True G1679810
TU1921622 lncRNA upstream 13803 27032252 ~ 27032520 (+) True G1679815
TU1921591 lncRNA upstream 49585 26995047 ~ 26996738 (+) True G1679786
TU1921072 lncRNA upstream 65092 26981002 ~ 26981231 (+) True G1679307
TU1921651 lncRNA downstream 1425 27047985 ~ 27050808 (+) True G1679833
TU1921655 lncRNA downstream 9747 27056307 ~ 27056636 (+) True G1679837
TU1921681 lncRNA downstream 46399 27092959 ~ 27093174 (+) True G1679862
TU1921713 lncRNA downstream 195951 27242511 ~ 27248194 (+) True G1679880
TU1921788 lncRNA downstream 253155 27299715 ~ 27299952 (+) True G1679954
XM_021576299.2 mRNA upstream 33712 27005405 ~ 27012611 (+) True LOC110499271
XM_036956093.1 mRNA upstream 67676 26974722 ~ 26978647 (+) False LOC110499270
XM_021576301.2 mRNA downstream 15725 27062285 ~ 27068808 (+) True LOC110499272
XM_036956098.1 mRNA downstream 53210 27099770 ~ 27132840 (+) False LOC110499274
XM_021576306.2 mRNA downstream 64776 27111336 ~ 27132840 (+) True LOC110499274
XM_036956100.1 mRNA downstream 102833 27149393 ~ 27241856 (+) False galnt2
XM_036956101.1 mRNA downstream 102838 27149398 ~ 27241856 (+) True galnt2
TU1920883 other upstream 270643 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 390212 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 413125 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 578370 26462194 ~ 26467953 (+) True G1678963
TU1919386 other upstream 1404709 25636691 ~ 25641614 (+) True G1677738
TU1921636 other downstream 37866 27084426 ~ 27087463 (+) True G1679823
TU1922082 other downstream 328794 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1670801 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1731446 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2410668 29457228 ~ 29457921 (+) True lhcgr

Expression Profile