RNA id: TCONS_00050288


Basic Information

Item Value
RNA id TCONS_00050288
length 855
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_025502
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32842794 ~ 32855371 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCATGGAAATGTCACACAAACATCGGTGTTTTGAAAACAACGCGTAAAGGAGATGTTTACGCCGCCTCACTGCACTTTTCCCCTCATACGATTTTAGgaaacAGGAAAGAGACTCAAAGATGAGACTCAGTCATCACAGCCTCAACACTTGAGTTCATTCCCATGCAAGAGACGAAAACATGACAAGCTCTGCAGTTGAAGCTGAGATGGAGGAAGAATATTCAGATTAGGAGGTGGCAGCACTGCAAAAAAGCCAAACCATGACCAGAAGCCAGCCGAGAAGGAGTCACCAGAGAACCTTTCAGCAATAAAACGATGGGAGATTGGTCCACTTCTACAGTCATTCAAATCCAAGATGGCTAGCTTCACTGAGATCGTTATGAGCCCTGTTCGGCTCTTCAAGCCAAGTGACCCTCTGTCATCAGCTCCACTTCCTGACCATCAAGAACCACTGACTGAATCAAATATTGAgatttcaacccgggctcatgaGGTCGAGactgaaagtgatccatttagaAATGGACTGATTCCAAAAAGGCCTTCTTCAGAAAAGGTACAGTGCAATACTGCACCGAAACGCCACAGAGTTTCACCGAGACTGAATTTTTGTACAGTTTCAACAAGTGACAACCACAAAGCAGTATTGGATGATATTCAAATGCCCAGTGACGTTGCATCAAATGAAGAAAATCAGATTAACTGTCCTTCAACCCAGTCACAAGCCGTCCTTCAAGATGAGACACGTGCTACAAGTCCTTGTAAAGCACAGACTCCATTTCACAGGAGTAGGCTAAATCTGTCAATAGACGAACCTTTGTATTCTAAAAGTGCCACGCGTTTGTCTAGTGAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3785 Orthologous to several human genes including PRR14 (proline rich 14).

Ensembl:

ensembl_id ENSDART00000172682

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052349 lncRNA upstream 37419 32799962 ~ 32805375 (+) True XLOC_025500
TCONS_00050281 lncRNA upstream 70577 32749686 ~ 32772217 (+) True XLOC_025499
TCONS_00050276 lncRNA upstream 134684 32707140 ~ 32708110 (+) True XLOC_025497
TCONS_00050272 lncRNA upstream 156128 32685986 ~ 32686666 (+) True XLOC_025495
TCONS_00052724 lncRNA upstream 167483 32671190 ~ 32675311 (+) False XLOC_025494
TCONS_00052725 lncRNA downstream 128856 32976882 ~ 33029027 (+) False XLOC_025505
TCONS_00052726 lncRNA downstream 157812 33005838 ~ 33029027 (+) True XLOC_025505
TCONS_00052350 lncRNA downstream 193281 33041307 ~ 33043550 (+) True XLOC_025506
TCONS_00052351 lncRNA downstream 195618 33043644 ~ 33045022 (+) True XLOC_025507
TCONS_00052727 lncRNA downstream 345342 33193368 ~ 33194715 (+) True XLOC_025509
TCONS_00050285 mRNA upstream 411 32832042 ~ 32842383 (+) False XLOC_025501
TCONS_00050287 mRNA upstream 583 32833661 ~ 32842211 (+) True XLOC_025501
TCONS_00050286 mRNA upstream 5167 32832538 ~ 32837627 (+) False XLOC_025501
TCONS_00050284 mRNA upstream 7166 32832042 ~ 32835628 (+) False XLOC_025501
TCONS_00050282 mRNA upstream 31432 32789605 ~ 32811362 (+) False XLOC_025500
TCONS_00050290 mRNA downstream 14704 32862730 ~ 32868675 (+) False XLOC_025503
TCONS_00050291 mRNA downstream 14712 32862738 ~ 32868646 (+) False XLOC_025503
TCONS_00050292 mRNA downstream 14735 32862761 ~ 32865551 (+) False XLOC_025503
TCONS_00050293 mRNA downstream 14753 32862779 ~ 32865152 (+) False XLOC_025503
TCONS_00050294 mRNA downstream 14776 32862802 ~ 32865290 (+) False XLOC_025503
TCONS_00050268 other upstream 170831 32671190 ~ 32671963 (+) False XLOC_025494
TCONS_00050265 other upstream 179048 32661991 ~ 32663746 (+) False XLOC_025493
TCONS_00050254 other upstream 271423 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050246 other upstream 307668 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050194 other upstream 1054157 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050297 other downstream 197857 33045883 ~ 33048390 (+) True XLOC_025508
TCONS_00050301 other downstream 497321 33345347 ~ 33363031 (+) False XLOC_025512
TCONS_00050303 other downstream 497444 33345470 ~ 33378643 (+) False XLOC_025512
TCONS_00050306 other downstream 559562 33407588 ~ 33407710 (+) True XLOC_025514
TCONS_00050308 other downstream 602074 33450100 ~ 33450219 (+) True XLOC_025516

Expression Profile

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