RNA id: TU1922602


Basic Information

Item Value
RNA id TU1922602
length 2187
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1680703
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28299343 ~ 28301581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagctcaaaccaagtttattaaCCCACTGGGTCATACAGCTGCAAAGACAAGACACGGTTACACAAGCACATATTTTTATAACCTTATAATAGGTGTGGTCAACCCCTTATCTAGACAACCAATATatctctgttgctaggcaggaatTGAATTGGTTCCTCTCACTGATGTAGCCACAGCGCTGCCTGTTACTTAAACCTTTGCGTGGAACGTATGTGTGAGATAATACTGCAGCAGGAGAGACATTGTGGTGGGCCTCTCTGGCATTCCTTACTCCTCCCCATTTCCGCAGCCTGCCTTGTCAGAGACTAACAATTGcctttcacctctctcctcagaaaCATGGAACAGAATATGAAGCTTCTActctcagtaactttccatattCTTAGTCCAATCTGTCTTTCATTGATTCCAACATATATACTTTCTTTATACAGTCATGAATGCGTTCTAGTATGGTAACATGATTACAgcccagcgttcaacaccatagtgcccacaaaactcatcactaagctaaggacactgggactaaacacatccctctgcaactggatcctggacttcctgtttgtttttacaatgctgctactcgctgttttacatctatgcatagtcactttacccatacctacatgtacaaattacctttaGTAAcatgtacccctgcacattgactcggtaccagtaccccctgtatatagcctcgttattttattgtgttactttttttaaattataattttttgtttatttggtaaatattttcttaactatttcttgaactgcaatgttggttaagagcttataagtaaccatttcacggcaaggtctacctgttgtattcagcacatgtgacaaatagttTGATTCGATTTGGATTAGTACATTTCAAGCTAGAGTCTAACAGTATCCTTACATGTTTTTAACACTATACGATCTATACAATTGTGTGAAAACCATTTAGGATGAAGCCAAAACAACGATAACACAGTCGCCTCTTTCTTGTCTAAAGAAACTGGACCAGTACAAGAGGAACGTGTCCAAGTCTTAGAACTAGACACCTAACTTAGACTCATCACCTCTCAGCCAAGGAGAACATCACAACAGAATGTTCTGGAGCTTAGACAGACTTTACCCTCTACTTCAGACTTGGCAGACACCTGTACGGTCATTTAATATACCCAGAGAAATGCTCTGATTACGATATACTTACTATTTAATACATGTTTCAGATCAATTGTATTGGATTCAAACATTGATTTTCCTATTCACATACACAGCACGACAGTTTGTATCGTAAGTATGTTCATTAGAAACATTTATTTAGAAAAATACATTTACTTGGCATTTTTACAACAATATGGAGATCCAACACATCCCATCATACTGGCATGTCACGTTCTGCAAGCGTAGAAAACACAGATATCCAACAATACACCTTATTTCTAAAGTAAaaacagtattacagtagtattacttCTTTTCAGTGTGTCAGAGAATCATTCAATAGATTTGTTGCCATACCGACATCACACCAATCACTTTCTTTGCTCATGACACTCCTAGTAAATGTGATAGTCCAACTCAAGAATCACATCCATGGCTGTCTTTACAGGACAGACTTTACCACAGAAGTCCAGTATTCAATAACAGCAGAAATGCCCCAAATGGGCAGGGAATATAACTCCATTCCTTATTTGTGTTTCTTACTTTCAATTAGACAGTTTGAAGACAGATGGAAGGGGATGAACTGCATAGAAAGTGGTGGACCAAGGGTTCGAATCCCTGCTATTGGGGAATGTACCTTCATTGGCCTGTCtacctgctttatatagcaagctacGTGACTCACTTTCTGTAAGAGCGAACCATTTTCGTGaatgtgtacctaataaactggccactgagtgtatgtgGTATATTGTGCAGGTTTTGCTTACAGTACCACTAGACCAAACTACAGCACTCACACACCCCTTTCTGTCTCCATGTCGGTGTCTGTTTCAGTGTTGGACGAGGCAGTCTCTGATCTTGTAGCTGATGACTCCCAGCAGCACCAGGGCAGGCAGGAAGGAGTAGAGCAGGAGGAAGTCCAGAGTGTAGCGGTCCAGGGCTCCTGGGTAACCCTGGTCTATGATGTCATCTCCATCTGTCATCAGACAGGCGCCTGGCAAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922897 lncRNA upstream 22520 28276106 ~ 28276823 (+) True G1680975
TU1922891 lncRNA upstream 37227 28261837 ~ 28262116 (+) True G1680969
TU1922890 lncRNA upstream 38041 28261095 ~ 28261302 (+) True G1680968
TU1922886 lncRNA upstream 43789 28255216 ~ 28255554 (+) True G1680964
TU1922863 lncRNA upstream 50376 28225995 ~ 28248967 (+) True cep170aa
TU1922951 lncRNA downstream 106498 28408079 ~ 28408380 (+) True G1681025
TU1922962 lncRNA downstream 167580 28469161 ~ 28470449 (+) True G1681035
TU1922990 lncRNA downstream 168894 28470475 ~ 28470973 (+) True G1681062
TU1922994 lncRNA downstream 173348 28474929 ~ 28475246 (+) True G1681066
TU1923020 lncRNA downstream 236243 28537824 ~ 28544583 (+) True G1681090
XM_021576351.2 mRNA upstream 5655 28225910 ~ 28293688 (+) False cep170aa
XM_021576352.2 mRNA upstream 5655 28225912 ~ 28293688 (+) False cep170aa
XM_021576350.2 mRNA upstream 5655 28225913 ~ 28293688 (+) False cep170aa
XM_021576353.2 mRNA upstream 5655 28225913 ~ 28293688 (+) False cep170aa
XM_021576359.2 mRNA upstream 5655 28225913 ~ 28293688 (+) False cep170aa
XM_021576362.2 mRNA downstream 14908 28316489 ~ 28331818 (+) False abcg8
XM_021576364.2 mRNA downstream 14908 28316489 ~ 28331818 (+) True abcg8
XM_036956117.1 mRNA downstream 177219 28478800 ~ 28525093 (+) False ppm1ba
XM_036956118.1 mRNA downstream 177220 28478801 ~ 28525093 (+) False ppm1ba
XM_036956119.1 mRNA downstream 177220 28478801 ~ 28525093 (+) False ppm1ba
TU1922082 other upstream 923524 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1211880 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1523663 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1643232 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1666145 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 415780 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 476425 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1155647 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1270854 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1273177 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile